KinMut2: Kinase mutation analysis
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README.md

KinMut2

To install this workflow you will need a working rbbt installation. Please find documentation on getting a working rbbt instalation here.

In short it involves configuring the base system with some packages needed by ruby, installing the necessary ruby gems (in particular the rbbt framework) and then bootstrapping the system (see the instructions for more details on file_servers)

An alternative version is using the rbbt-image package that can construct a provision script to be used for local instalations as well as producing docker or vagrant images.

The simplest way to use it is calling the predict task of the workflow, which limits itself to the KinMut predictions. The predict_all method will call the StructurePPi and DbNSFP workflow that have a very lengthy boostrapping process, so its recomended to configure these as remote workflows if one is interested in this option.

Note that while the code for the web server is also provided, part of it depends on having access to the postgress databases that have not been included in this repository and will not render any information.