** package 'RcppArmadillo' successfully unpacked and MD5 sums checked
* checking LAPACK_LIBS: R-supplied partial LAPACK found
* some operations may not be available
** libs
g++ -m64 -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/srv/global/scratch/groups/sbs/RLIBS/BioConductor/Rcpp/include"  -I../inst/include -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic  -c RcppArmadillo.cpp -o RcppArmadillo.o
In file included from ../inst/include/armadillo:107,
                 from ../inst/include/RcppArmadilloForward.h:46,
                 from ../inst/include/RcppArmadillo.h:31,
                 from RcppArmadillo.cpp:22:
../inst/include/armadillo_bits/traits.hpp: In instantiation of 'const bool arma::is_arma_type<std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum> >::value':
../inst/include/armadillo_bits/op_logmat_meat.hpp:289:   instantiated from here
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_subview_elem2'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_subview_elem1'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_subview_col'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_subview_row'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_subview'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_diagview'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_mtGlue'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
emplate<class T> struct arma::is_mtOp'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_eGlue'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_eOp'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_Glue'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_Op'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_Gen'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<int>, std::__is_floating<int> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_Mat'
../inst/include/armadillo_bits/traits.hpp: In instantiation of 'const bool arma::is_arma_type<std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum> >::value':
../inst/include/armadillo_bits/op_logmat_meat.hpp:289:   instantiated from here
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_subview_elem2'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_subview_elem1'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_subview_col'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_subview_row'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_subview'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_diagview'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_mtGlue'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_mtOp'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_eGlue'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_eOp'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_Glue'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_Op'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_Gen'
../inst/include/armadillo_bits/traits.hpp:642: error: 'std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>' is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:642: error:   trying to instantiate 'template<class T> struct arma::is_Mat'
make: *** [RcppArmadillo.o] Error 1
ERROR: compilation failed for package 'RcppArmadillo'