From 0acb668d005acda090c64305bf360329857d4033 Mon Sep 17 00:00:00 2001
From: ssun30 <sun.su@northeastern.edu>
Date: Fri, 15 Mar 2024 19:48:58 -0400
Subject: [PATCH] Fixed syntax problems with SEI examples

---
 examples/rmg/SEI_pure_ACN/input.py | 26 +++++++++++++++++---------
 examples/rmg/SEI_pure_EC/input.py  | 15 +++++++++------
 2 files changed, 26 insertions(+), 15 deletions(-)

diff --git a/examples/rmg/SEI_pure_ACN/input.py b/examples/rmg/SEI_pure_ACN/input.py
index 22891fd91f..2a4136c59c 100644
--- a/examples/rmg/SEI_pure_ACN/input.py
+++ b/examples/rmg/SEI_pure_ACN/input.py
@@ -18,7 +18,7 @@
     'Li_Abstraction',
     'R_Addition_MultipleBond_Disprop',
     'Cation_R_Recombination',
-    'Cation_Addition_Multiple_Bond',
+    'Cation_Addition_MultipleBond',
     '1,2-Birad_to_alkene',
     '1,2_Insertion_CO',
     '1,2_Insertion_carbene',
@@ -158,16 +158,24 @@
     saveEdgeSpecies=False,
 )
 
+forbidden(
+    label='vacancies',
+    structure=adjacencyListGroup("""
+1 Xv u0 p0 c0
+"""),
+)
+
+forbidden(
+    label='Li2',
+    structure=adjacencyList("""
+1 Li u0 p0 c0 {2,S}
+2 Li u0 p0 c0 {1,S}"""),
+)
+
 generatedSpeciesConstraints(
     allowed=['input species','reaction libraries'],
     maximumSurfaceSites=1,
-    explicitlyForbiddenGroups=[groupAdjacencyList("""
-1 Xv u0 p0 c0
-""")],
-    explicitlyForbiddenMolecules=[adjacencyList("""
-1 Li u0 p0 c0 {2,S}
-2 Li u0 p0 c0 {1,S}""")],
-     maximumCarbonAtoms=7,
-     maximumNitrogenAtoms=4,
+    maximumCarbonAtoms=7,
+    maximumOxygenAtoms=4,
     maximumRadicalElectrons=1,
 )
diff --git a/examples/rmg/SEI_pure_EC/input.py b/examples/rmg/SEI_pure_EC/input.py
index 4c5a4d8780..2912c7f2ba 100644
--- a/examples/rmg/SEI_pure_EC/input.py
+++ b/examples/rmg/SEI_pure_EC/input.py
@@ -275,14 +275,17 @@
     saveEdgeSpecies=False,
 )
 
+forbidden(
+    label='vacancies',
+    structure=adjacencyListGroup("""
+1 Xv u0 p0 c0
+"""),
+)
+
 generatedSpeciesConstraints(
     allowed=['input species','reaction libraries'],
     maximumSurfaceSites=1,
-    explicitlyForbiddenGroups=[groupAdjacencyList("""
-1 Xv u0 p0 c0
-""")],
-     maximumCarbonAtoms=8,
-     maximumOxygenAtoms=8,
+    maximumCarbonAtoms=8,
+    maximumOxygenAtoms=8,
     maximumRadicalElectrons=1,
 )
-