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Images from the ReproIn OHBM submission. Author: @mvdoc

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yarikoptic committed Mar 1, 2018
1 parent 1ff34a9 commit fe5488b59c607ead1384da0e3efcbe57770c34e8
@@ -23,8 +23,30 @@ existing software projects:
The header of the [heuristic] file describes details of the
specification on how to organize and name study sequences at MR console.

## Overall workflow

Schematic description of the overall setup:

![Setup](docs/source/images/dbic-flow.png)
![Setup](docs/source/images/dbic-conversions.png)

## Tutorial/HOWTO

### Data collection

#### Making your sequence compatible with ReproIn heuristic

- [Walkthrough #1](docs/walkthrough-1.md): guides you through
ReproIn approach to organizing exam cards and managing canceled runs/sessions
on Siemens scanner(s)

#### Renaming sequences to conform the specification needed by ReproIn

TODO: Describe how sequences could be renamed per study by creating a derived
heuristic

### Conversion

1. Install [HeuDiConv] and [DataLad]: e.g.
`apt-get update; apt-get install heudiconv datalad` in any NeuroDebian environment.
If you do not have one, you could get either of
@@ -64,16 +86,7 @@ specification on how to organize and name study sequences at MR console.

... WiP ...

### Walkthroughs: Making your sequence compatible with ReproIn heuristic

- [Walkthrough #1](docs/walkthrough-1.md): guides you through
ReproIn approach to organizing exam cards and managing canceled runs/sessions
on Siemens scanner(s)

#### Renaming sequences to conform the specification needed by ReproIn

TODO: Describe how sequences could be renamed per study by creating a derived
heuristic

#### HeuDiConv options to overload autodetected variables:

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