{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":94551412,"defaultBranch":"master","name":"rfam-family-pipeline","ownerLogin":"Rfam","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2017-06-16T14:24:20.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/15381791?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1722257131.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"82d5c5bd95a0c866de4e0ab72a5535afe29a795a","ref":"refs/heads/tmp-rqc-all","pushedAt":"2024-07-29T12:45:31.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nawrockie","name":"Eric Nawrocki","path":"/nawrockie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/739302?s=80&v=4"},"commit":{"message":"Comments out SEEDSCORES and SEEDTBLOUT from loadRfamFromLocalFile","shortMessageHtmlLink":"Comments out SEEDSCORES and SEEDTBLOUT from loadRfamFromLocalFile"}},{"before":"cfb51092a8a9d1df17d5856b1fc68382bd3864e2","after":"2d66cdb60bbff8adead35bf0da973b697dc4599b","ref":"refs/heads/master","pushedAt":"2024-07-29T09:44:15.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"},"commit":{"message":"Merge pull request #101 from Rfam/slurm-configur-state\n\nAdds support for CONFIGUR squeue state","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2434949605\" data-permission-text=\"Title is private\" data-url=\"https://github.com/Rfam/rfam-family-pipeline/issues/101\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/Rfam/rfam-family-pipeline/pull/101/hovercard\" href=\"https://github.com/Rfam/rfam-family-pipeline/pull/101\">#101</a> from Rfam/slurm-configur-state"}},{"before":"a78d0d3249732e0f72174dda07477bd15a078761","after":null,"ref":"refs/heads/slurm-configure-state","pushedAt":"2024-07-29T09:42:05.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"nawrockie","name":"Eric Nawrocki","path":"/nawrockie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/739302?s=80&v=4"}},{"before":null,"after":"9249fd9cb62bee7175fd16f29a762077db9e5955","ref":"refs/heads/slurm-configur-state","pushedAt":"2024-07-29T09:40:53.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nawrockie","name":"Eric Nawrocki","path":"/nawrockie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/739302?s=80&v=4"},"commit":{"message":"Adds support for CONFIGUR squeue state","shortMessageHtmlLink":"Adds support for CONFIGUR squeue state"}},{"before":null,"after":"a78d0d3249732e0f72174dda07477bd15a078761","ref":"refs/heads/slurm-configure-state","pushedAt":"2024-07-29T09:35:31.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nawrockie","name":"Eric Nawrocki","path":"/nawrockie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/739302?s=80&v=4"},"commit":{"message":"Adds CONFIGUR slurm squeue state and updates currenly unused wait_for_cluster() for slurm","shortMessageHtmlLink":"Adds CONFIGUR slurm squeue state and updates currenly unused wait_for…"}},{"before":"ce72cf566d1e9bfa1667cf934a81ea5eb5e67ecb","after":null,"ref":"refs/heads/slurm-mempercpu","pushedAt":"2024-07-16T07:37:49.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"}},{"before":"37f8c53d591de38843d3ac08c867a70f6b1229d2","after":"cfb51092a8a9d1df17d5856b1fc68382bd3864e2","ref":"refs/heads/master","pushedAt":"2024-07-16T07:32:42.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"},"commit":{"message":"Merge pull request #100 from Rfam/slurm-mempercpu\n\nSets <n> to an integer for sbatch --mem-per-cpu=<n>","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2409005026\" data-permission-text=\"Title is private\" data-url=\"https://github.com/Rfam/rfam-family-pipeline/issues/100\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/Rfam/rfam-family-pipeline/pull/100/hovercard\" href=\"https://github.com/Rfam/rfam-family-pipeline/pull/100\">#100</a> from Rfam/slurm-mempercpu"}},{"before":null,"after":"ce72cf566d1e9bfa1667cf934a81ea5eb5e67ecb","ref":"refs/heads/slurm-mempercpu","pushedAt":"2024-07-15T15:18:53.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nawrockie","name":"Eric Nawrocki","path":"/nawrockie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/739302?s=80&v=4"},"commit":{"message":"Sets <n> to an integer for sbatch --mem-per-cpu=<n>","shortMessageHtmlLink":"Sets &lt;n&gt; to an integer for sbatch --mem-per-cpu=&lt;n&gt;"}},{"before":"c4c268a540ebf5efc3d8d6a743e4b9bd853679b7","after":"37f8c53d591de38843d3ac08c867a70f6b1229d2","ref":"refs/heads/master","pushedAt":"2024-07-12T09:12:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"},"commit":{"message":"Tolerate 404's in RNAcentral lookup\n\nThe new MD5 based endpoint will return a 404 for cases where the MD5 is\nunknown. An error response is assumed to be unusual and a error\ncondition because, previously the API would return a empty list and it\nwould not fail. This leads to failing the QC of any sequence not in\nRNAcentral.\n\nThis change makes a failing response treated as not found. This could\ncover up errors in the RNAcentral API and then fail later, I assume but\nhopefully this would be caught elsewhere.","shortMessageHtmlLink":"Tolerate 404's in RNAcentral lookup"}},{"before":"5b35adbbced26ba3b5b097058402633d96962282","after":"c4c268a540ebf5efc3d8d6a743e4b9bd853679b7","ref":"refs/heads/master","pushedAt":"2024-07-12T07:51:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"},"commit":{"message":"Try new md5 API endpoint\n\nHopefully this is more stable. It seems that too many queries to the\nnormal RNA endpoint cause issues. Hopefully using this end point\nalleviates them.","shortMessageHtmlLink":"Try new md5 API endpoint"}},{"before":"d548c27e8102957ab5418d3dcf37263c0dfdfe42","after":null,"ref":"refs/heads/hotfix-rewrite-seed","pushedAt":"2024-07-09T07:53:57.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"}},{"before":"d696710bf028c8a0fa055e323509c90c9993c48d","after":"5b35adbbced26ba3b5b097058402633d96962282","ref":"refs/heads/master","pushedAt":"2024-07-09T07:45:07.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"},"commit":{"message":"Merge pull request #99 from Rfam/hotfix-rewrite-seed\n\nFor rewrite_seed_with_rf.pl, SCORES and SEEDSCORES can be empty","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2396617918\" data-permission-text=\"Title is private\" data-url=\"https://github.com/Rfam/rfam-family-pipeline/issues/99\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/Rfam/rfam-family-pipeline/pull/99/hovercard\" href=\"https://github.com/Rfam/rfam-family-pipeline/pull/99\">#99</a> from Rfam/hotfix-rewrite-seed"}},{"before":null,"after":"d548c27e8102957ab5418d3dcf37263c0dfdfe42","ref":"refs/heads/hotfix-rewrite-seed","pushedAt":"2024-07-08T21:31:49.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nawrockie","name":"Eric Nawrocki","path":"/nawrockie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/739302?s=80&v=4"},"commit":{"message":"For rewrite_seed_with_rf.pl, SCORES and SEEDSCORES can be empty","shortMessageHtmlLink":"For rewrite_seed_with_rf.pl, SCORES and SEEDSCORES can be empty"}},{"before":"e0caf099e67617d1eef2ebe733b5c6863b3613e2","after":"d696710bf028c8a0fa055e323509c90c9993c48d","ref":"refs/heads/master","pushedAt":"2024-06-26T08:45:14.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"},"commit":{"message":"Merge pull request #98 from Rfam/slurmize-dequeuer\n\nSlurmize dequeuer","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2373054813\" data-permission-text=\"Title is private\" data-url=\"https://github.com/Rfam/rfam-family-pipeline/issues/98\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/Rfam/rfam-family-pipeline/pull/98/hovercard\" href=\"https://github.com/Rfam/rfam-family-pipeline/pull/98\">#98</a> from Rfam/slurmize-dequeuer"}},{"before":"31911e52ccbe69cc2e65344378c8fac0e9f7f70d","after":"e0ff9a7d7e3aeeb66cdc03736011971e28edbfbd","ref":"refs/heads/slurmize-dequeuer","pushedAt":"2024-06-25T16:02:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nawrockie","name":"Eric Nawrocki","path":"/nawrockie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/739302?s=80&v=4"},"commit":{"message":"Tweaks for slurmization","shortMessageHtmlLink":"Tweaks for slurmization"}},{"before":"f1989218aa1eb318990699190bed1b74247ce23f","after":"31911e52ccbe69cc2e65344378c8fac0e9f7f70d","ref":"refs/heads/slurmize-dequeuer","pushedAt":"2024-06-25T15:54:45.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"nawrockie","name":"Eric Nawrocki","path":"/nawrockie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/739302?s=80&v=4"},"commit":{"message":"Combines _submit_lsf_job and _submit_slurm_job","shortMessageHtmlLink":"Combines _submit_lsf_job and _submit_slurm_job"}},{"before":null,"after":"f1989218aa1eb318990699190bed1b74247ce23f","ref":"refs/heads/slurmize-dequeuer","pushedAt":"2024-06-25T15:28:01.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nawrockie","name":"Eric Nawrocki","path":"/nawrockie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/739302?s=80&v=4"},"commit":{"message":"Merges master branch into slurmize-dequeuer","shortMessageHtmlLink":"Merges master branch into slurmize-dequeuer"}},{"before":"f6766be1b552992124a1627d13187bef458a7ac5","after":null,"ref":"refs/heads/slurm-uname-fix","pushedAt":"2024-06-12T06:43:43.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"}},{"before":"8295125d8f715db5ecf7cd8bf3597f60a6eff02c","after":"e0caf099e67617d1eef2ebe733b5c6863b3613e2","ref":"refs/heads/master","pushedAt":"2024-06-12T06:43:38.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"},"commit":{"message":"Merge pull request #97 from Rfam/slurm-uname-fix\n\nW/slurm, squeue outputs first 25 chars of unames, instead of first 10","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2347380154\" data-permission-text=\"Title is private\" data-url=\"https://github.com/Rfam/rfam-family-pipeline/issues/97\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/Rfam/rfam-family-pipeline/pull/97/hovercard\" href=\"https://github.com/Rfam/rfam-family-pipeline/pull/97\">#97</a> from Rfam/slurm-uname-fix"}},{"before":null,"after":"f6766be1b552992124a1627d13187bef458a7ac5","ref":"refs/heads/slurm-uname-fix","pushedAt":"2024-06-11T22:01:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nawrockie","name":"Eric Nawrocki","path":"/nawrockie","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/739302?s=80&v=4"},"commit":{"message":"W/slurm, squeue outputs first 25 chars of unames, instead of first 10","shortMessageHtmlLink":"W/slurm, squeue outputs first 25 chars of unames, instead of first 10"}},{"before":"1c830b5ba0f064530b82eb3c222408aeef1e69c8","after":null,"ref":"refs/heads/lsf2slurm","pushedAt":"2024-05-10T08:45:03.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"}},{"before":"a17ae9ca80d32b5e6cc5294f08b1d77be8d5be0b","after":"8295125d8f715db5ecf7cd8bf3597f60a6eff02c","ref":"refs/heads/master","pushedAt":"2024-05-10T08:44:25.000Z","pushType":"pr_merge","commitsCount":18,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"},"commit":{"message":"Merge pull request #95 from Rfam/lsf2slurm\n\nSlurm support","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1959545282\" data-permission-text=\"Title is private\" data-url=\"https://github.com/Rfam/rfam-family-pipeline/issues/95\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/Rfam/rfam-family-pipeline/pull/95/hovercard\" href=\"https://github.com/Rfam/rfam-family-pipeline/pull/95\">#95</a> from Rfam/lsf2slurm"}},{"before":"19edc26681b9a5aa9c3cc1a18524e9f1ffba5310","after":null,"ref":"refs/heads/bugfix-seedqc","pushedAt":"2024-02-09T10:30:48.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"}},{"before":"052186a69b96d3bd7540cef29c9e38de89b0f585","after":null,"ref":"refs/heads/seed-qc-check","pushedAt":"2024-02-09T10:30:35.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"}},{"before":"4d0fd6e82b796b6875d4812b1726df730de6cc2f","after":null,"ref":"refs/heads/rfci-clan-aware-overlap-check","pushedAt":"2024-02-09T10:30:27.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"}},{"before":"3b4a35b895725685de590166d40f680987ee69d4","after":null,"ref":"refs/heads/hotfix-simpler-xml-handling","pushedAt":"2024-02-09T10:30:23.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"}},{"before":"04463e0cd64d10ccae498be0d8b7a3107b6f1377","after":null,"ref":"refs/heads/rfsearch-big-models","pushedAt":"2024-02-09T10:30:16.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"}},{"before":"59e7b7ba346943435bd3b3a39a868ebf1475127f","after":null,"ref":"refs/heads/fix-add-ref","pushedAt":"2024-02-06T11:47:44.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"}},{"before":"86a0c46af9541e9dfcd16cdab6cd6c6b93094af8","after":null,"ref":"refs/heads/rfci-overlaps","pushedAt":"2023-11-29T08:46:15.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"}},{"before":"0620890108bd31d390e6e2494f27802c06b431d6","after":"a17ae9ca80d32b5e6cc5294f08b1d77be8d5be0b","ref":"refs/heads/master","pushedAt":"2023-11-29T08:46:08.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"blakesweeney","name":"Blake Sweeney","path":"/blakesweeney","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/330875?s=80&v=4"},"commit":{"message":"Merge pull request #96 from Rfam/rfci-overlaps\n\nAdds bit scores to output of overlap checking with other families (rfci.pl and rfnew.pl (at least))","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2015031211\" data-permission-text=\"Title is private\" data-url=\"https://github.com/Rfam/rfam-family-pipeline/issues/96\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/Rfam/rfam-family-pipeline/pull/96/hovercard\" href=\"https://github.com/Rfam/rfam-family-pipeline/pull/96\">#96</a> from Rfam/rfci-overlaps"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEi-NgyAA","startCursor":null,"endCursor":null}},"title":"Activity · Rfam/rfam-family-pipeline"}