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ID Transposable Elements in C virginica genome #352

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sr320 opened this Issue Aug 22, 2018 · 2 comments

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kubu4 commented Aug 22, 2018

Should've clarified first, as I've already started this using the v300 genome.

Do you want me to use the NCBI version instead (or, run on both)?

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kubu4 commented Aug 28, 2018

Done with v300 genome:

http://onsnetwork.org/kubu4/2018/08/28/transposable-element-mapping-crassostrea-virginica-genome-cvirginica_v300-using-repeatmasker-4-07/

Of note, I ran this with four different species settings:

  1. all
  2. Crassotrea gigas
  3. Crassostrea virginica
  4. default (i.e. human genome)

@sr320 sr320 closed this Aug 28, 2018

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