python-pandas_lecture

Download this repository into the /vol/volumes/python-pandas directory like this:

cd /vol/volumes/python-pandas

git clone https://github.com/RobinWarner/python-pandas_lecture

Now, copy the required data into the new directory:

cp *.tsv python-pandas_lecture

Finally, activate the conda environment and open jupyter notebook:

conda activate python-pandas

jupyter notebook

Day 2

samples

If you want to be tidy, you can create a new directory in the /vol/volumes/python-pandas where you save the new data and notebook. Download the new data using wget from ..

https://raw.githubusercontent.com/SPAAM-community/AncientMetagenomeDir/b187df6ebd23dfeb42935fd5020cb615ead3f164/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv

libraries

https://raw.githubusercontent.com/SPAAM-community/AncientMetagenomeDir/b187df6ebd23dfeb42935fd5020cb615ead3f164/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv

Also, get the new notebook using

wget https://raw.githubusercontent.com/RobinWarner/python-pandas_lecture/main/new-tasks.ipynb