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Dear all,
are there any plans to support VCF input? It would be nice if it would support genotypes, and both the GL and PL likelihoods.
Not sure if it might help, but with bcftools it is possible to convert a VCF to "almost" a beagle format:
bcftools
bcftools query --format "%CHROM\t%POS\t%REF\t%ALT[\t%GL]\n"
Maybe this format would be easier to read internally? thanks,
The text was updated successfully, but these errors were encountered:
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Dear all,
are there any plans to support VCF input?
It would be nice if it would support genotypes, and both the GL and PL likelihoods.
Not sure if it might help, but with
bcftoolsit is possible to convert a VCF to "almost" a beagle format:Maybe this format would be easier to read internally?
thanks,
The text was updated successfully, but these errors were encountered: