KnetMiner - An interactive web application to search a knowledge graph for the discovery of genes and networks controlling complex traits.
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KnetMiner is a client-server application for biological knowledge mining and discovery. It supports advanced queries, query suggestions and interactive visualisations. All client code is written in JavaScript/HTML5 using and extending libraries such as D3.js and Cytoscape.js to visualise genomics and network data. The server is written purely in Java making use of the Ondex API ( to query a large genome-scale knowledge network (graph database). The graph database is indexed using Lucene and hold in memory to allow fast graph queries.

Check our wiki pages or contact us to learn how you can setup your own KnetMiner instance.