Pinned

1. Arboretum2.0 Arboretum2.0 Public

   The Arboretum 2.0 is the next release of the original code of Arboretum. It makes running Arboretum easier by taking care of initial cluster assignments.

   C 2 1

2. merlin-p merlin-p Public

   A prior-based integrative framework for functional transcriptional regulatory network inference (Fotuhi Siahpirani & Roy, Nucleic Acids Research 2017)

   C 4 6

3. mrtle mrtle Public

   Multi-species regulatory network learning (Koch et al, Cell Systems 2017)

   C 2 2

4. grinch grinch Public

   GRiNCH: Graph-Regularized NMF and Clustering for Hi-C

   C 9 1

5. HiC-Reg HiC-Reg Public

   HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals

   C 8 3

6. drmn drmn Public

   DRMN with multi-task learning regression

   C 5 1