R functions related to pedigrees
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
R
inst
man
src
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
README.md
pedigreeR.Rproj

README.md

pedigreeR

The pedigreeR package offers a suit of functions for pedigree analyses, including: sorting and editing pedigree data, computing inbreeding, additive relationships and functions of it (e.g., cholesky decomposistions, inverse of a numerator relationship matrix, etc.). The package was originally co-developed by Douglas M. Bates and Ana I. Vazquez and was incorporated in the lme4 R-package. Recently, pedigreeR evolved to an stand-alone package. We have added new features for analysis of data from self-pollination and for subsetting pedigrees.

Developers: Ana I. Vazquez & Douglas M. Bates.

Contributors: Paulino Perez-Rodriguez & Gustavo de los Campos.

Installing pedigreeR from GitHub

#R functions related to pedigrees
install.packages(pkg='devtools',repos='https://cran.r-project.org/')  #1# install devtools
library(devtools)                                                     #2# load the library
install_git('https://github.com/Rpedigree/pedigreeR/')                #3# install pedigreeR from GitHub

Examples

  1. Completing and sorting a pedigree.
  2. Computing inbreeding, additive relationships and funcitons of it.
  3. Subsetting a Pedigree using prunePed.
  4. Pedigree analyses for self-pollinated species.
  5. Cross-validation analyses with pedigreeR and pedigreemm.