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@zakandrewking zakandrewking released this Nov 1, 2019 · 1 commit to master since this release

Version 1.6 introduces a significant number of new models to the repository. We describe the addition of 23 new models that valuably expand the portion of the phylogenetic tree covered by BiGG Models. The models include updates for four E. coli strains, S. aureus, and M. tuberculosis H37Rv and new models for five Plasmodium strains, stage specific models for Trypanosoma cruzi, C. difficile, and A. baumannii. We also expand the functionality for hosting multi-strain models, which have proven to be insightful in a variety of studies centered on comparisons of related strains. These multistrain collections are available for download on the model pages for iYL1228, STM_v1_0, and iCN718.

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Pre-release

@zakandrewking zakandrewking released this Sep 14, 2019 · 22 commits to master since this release

1.6.0-beta.1

new links from updates page to multistrain download pages
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@zakandrewking zakandrewking released this Feb 27, 2018 · 66 commits to master since this release

Version 1.5 introduces Recon3D, the latest genome-scale model of the human metabolic network.

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@zakandrewking zakandrewking released this Oct 9, 2017 · 73 commits to master since this release

BiGG Models v1.4 introduces four new genome-scale models and a host of improvements, including:

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@zakandrewking zakandrewking released this Nov 29, 2016 · 103 commits to master since this release

This release removes a number of duplicate metabolites and reactions in BiGG.

A new model has been added: iCHOv1

ModelPolisher has been updated to version 1.5.

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@zakandrewking zakandrewking released this May 11, 2016 · 115 commits to master since this release

  • Fixed a few Escher bugs (#195)
  • Added EC numbers for reactions (#87)
  • corrected ID for iJR904
  • updated to latest COBRApy and Model Polisher for model downloads
  • Added rxnGeneMat to Matlab files (#197)
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@zakandrewking zakandrewking released this Mar 27, 2016 · 133 commits to master since this release

BiGG Models is out of beta!

This release adds a few new features and a ton of bug fixes:

  • Added a model, iAF1260b
  • New downloads for the entire reaction and metabolite namespaces
  • External database link for reactions thanks to MetaNetX
  • Upgraded to Escher 1.4. Now, clicking metabolites and reactions on the Escher map takes you to the BiGG page.
  • Fixed some erroneous charges and objectives
  • Comments are now handled directly with GitHub issues
  • Using the latest release of ModelPolisher v1.2
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@zakandrewking zakandrewking released this Mar 26, 2016 · 148 commits to master since this release

The first BiGG Models release. This release is described in our publication:

King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. (2015). BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models. Nucl Acids Res. doi:10.1093/nar/gkv1049.

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Aug 12, 2015

8-16

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