v1.3.0

@zakandrewking zakandrewking released this Nov 29, 2016 · 1 commit to master since this release

This release removes a number of duplicate metabolites and reactions in BiGG.

A new model has been added: iCHOv1

ModelPolisher has been updated to version 1.5.

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v1.2

@zakandrewking zakandrewking released this May 11, 2016 · 13 commits to master since this release

  • Fixed a few Escher bugs (#195)
  • Added EC numbers for reactions (#87)
  • corrected ID for iJR904
  • updated to latest COBRApy and Model Polisher for model downloads
  • Added rxnGeneMat to Matlab files (#197)

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v1.1

@zakandrewking zakandrewking released this Mar 26, 2016 · 31 commits to master since this release

BiGG Models is out of beta!

This release adds a few new features and a ton of bug fixes:

  • Added a model, iAF1260b
  • New downloads for the entire reaction and metabolite namespaces
  • External database link for reactions thanks to MetaNetX
  • Upgraded to Escher 1.4. Now, clicking metabolites and reactions on the Escher map takes you to the BiGG page.
  • Fixed some erroneous charges and objectives
  • Comments are now handled directly with GitHub issues
  • Using the latest release of ModelPolisher v1.2

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v1.0

@zakandrewking zakandrewking released this Feb 23, 2016 · 46 commits to master since this release

The first BiGG Models release. This release is described in our publication:

King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. (2015). BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models. Nucl Acids Res. doi:10.1093/nar/gkv1049.

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