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OxidizeME: computing multiscale cellular responses to reactive oxygen species

OxidizeME model and notebooks.

Requirements

  1. Python
    • tested on Python 2.7
  2. cobrapy
    • tested on 0.5.11
    • not yet fully compatible with cobrapy >= 0.6
  3. cobrame: follow installation instructions here: https://github.com/SBRG/cobrame
  4. ecolime: follow installation instructions here: https://github.com/SBRG/ecolime
  5. solvemepy: follow installation instructions here: https://github.com/SBRG/solvemepy

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OxidizeME model and notebooks

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