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Pre-release

@github-actions github-actions released this Sep 24, 2020

Commits

  • [a0aa758]: modified optimization parameters (AtefehKashani) #656
  • [855dbf9]: changes the prepoutput and pointfiles to groomed and shape_models (AtefehKashani) #656
  • [9f61cbc]: modified la parameters (AtefehKashani) #656
  • [2444ac9]: added mean shape images of the new experiments (AtefehKashani) #656
  • [a345bba]: added pca variation of single/multiscale (AtefehKashani) #656
  • [6bc9853]: fixed the input path for crop function (AtefehKashani) #656
  • [bf822b8]: Merge branch 'master' into usecases (Alan Morris) #656
  • [2fda819]: Fix test path (Alan Morris) #656
  • [88cf9b4]: Adding default arg to RunUseCase for issue 593 (jadie1) #656
  • [63844ff]: Updating ellipsoid to use DTs when -start_with_prepped_data is used and to print warning when --start_with_image_and_segmentation_data is used (jadie1) #656
  • [5b2a662]: Updating ellipsoid.zip to be consistent with portal (jadie1) #656
  • [bda3c77]: Fixing DT path for --start_with_prepped_data (jadie1) #656
  • [ae6bd97]: Updating subsample to be two arguements (jadie1) #656
  • [fabb2b8]: Updating documentation (jadie1) #656
  • [d3818bf]: Fixing issue 614 in femur_mesh.py (jadie1) #656
  • [1965936]: Fixing issue 614 in ellipsoid fd (jadie1) #656
  • [13e00b8]: Small fix (Jadie Adams) #656
  • [ec24473]: Merge branch 'master' into usecases (Alan Morris) #656
  • [b219365]: Add getFileList api to DatasetUtils (Oleks Korshak) #656
  • [c60e426]: Use dataset versioning and add documentation with example on modifying dataset (Oleks Korshak) #656
  • [2d84677]: improve uploadDataset API to skip existing files rather than failing when reuploading (Oleks Korshak) #656
  • [e540aaf]: cleanup ellipsoid use case logic, replace with new zips (Oleks Korshak) #656
  • [b30d321]: Merge branch 'dataset_versioning' into usecases (Oleks Korshak) #656
  • [cefbed2]: Merge branch 'master' into usecases (Oleks Korshak) #656
Assets 3
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@github-actions github-actions released this Sep 24, 2020

Commits

  • [a0aa758]: modified optimization parameters (AtefehKashani) #656
  • [855dbf9]: changes the prepoutput and pointfiles to groomed and shape_models (AtefehKashani) #656
  • [9f61cbc]: modified la parameters (AtefehKashani) #656
  • [2444ac9]: added mean shape images of the new experiments (AtefehKashani) #656
  • [a345bba]: added pca variation of single/multiscale (AtefehKashani) #656
  • [6bc9853]: fixed the input path for crop function (AtefehKashani) #656
  • [bf822b8]: Merge branch 'master' into usecases (Alan Morris) #656
  • [2fda819]: Fix test path (Alan Morris) #656
  • [88cf9b4]: Adding default arg to RunUseCase for issue 593 (jadie1) #656
  • [63844ff]: Updating ellipsoid to use DTs when -start_with_prepped_data is used and to print warning when --start_with_image_and_segmentation_data is used (jadie1) #656
  • [5b2a662]: Updating ellipsoid.zip to be consistent with portal (jadie1) #656
  • [bda3c77]: Fixing DT path for --start_with_prepped_data (jadie1) #656
  • [ae6bd97]: Updating subsample to be two arguements (jadie1) #656
  • [fabb2b8]: Updating documentation (jadie1) #656
  • [d3818bf]: Fixing issue 614 in femur_mesh.py (jadie1) #656
  • [1965936]: Fixing issue 614 in ellipsoid fd (jadie1) #656
  • [13e00b8]: Small fix (Jadie Adams) #656
  • [ec24473]: Merge branch 'master' into usecases (Alan Morris) #656
  • [b219365]: Add getFileList api to DatasetUtils (Oleks Korshak) #656
  • [c60e426]: Use dataset versioning and add documentation with example on modifying dataset (Oleks Korshak) #656
  • [2d84677]: improve uploadDataset API to skip existing files rather than failing when reuploading (Oleks Korshak) #656
  • [e540aaf]: cleanup ellipsoid use case logic, replace with new zips (Oleks Korshak) #656
  • [b30d321]: Merge branch 'dataset_versioning' into usecases (Oleks Korshak) #656
  • [cefbed2]: Merge branch 'master' into usecases (Oleks Korshak) #656
Assets 3
Pre-release

@github-actions github-actions released this Sep 24, 2020

Commits

  • [a0aa758]: modified optimization parameters (AtefehKashani) #656
  • [855dbf9]: changes the prepoutput and pointfiles to groomed and shape_models (AtefehKashani) #656
  • [9f61cbc]: modified la parameters (AtefehKashani) #656
  • [2444ac9]: added mean shape images of the new experiments (AtefehKashani) #656
  • [a345bba]: added pca variation of single/multiscale (AtefehKashani) #656
  • [6bc9853]: fixed the input path for crop function (AtefehKashani) #656
  • [bf822b8]: Merge branch 'master' into usecases (Alan Morris) #656
  • [2fda819]: Fix test path (Alan Morris) #656
  • [88cf9b4]: Adding default arg to RunUseCase for issue 593 (jadie1) #656
  • [63844ff]: Updating ellipsoid to use DTs when -start_with_prepped_data is used and to print warning when --start_with_image_and_segmentation_data is used (jadie1) #656
  • [5b2a662]: Updating ellipsoid.zip to be consistent with portal (jadie1) #656
  • [bda3c77]: Fixing DT path for --start_with_prepped_data (jadie1) #656
  • [ae6bd97]: Updating subsample to be two arguements (jadie1) #656
  • [fabb2b8]: Updating documentation (jadie1) #656
  • [d3818bf]: Fixing issue 614 in femur_mesh.py (jadie1) #656
  • [1965936]: Fixing issue 614 in ellipsoid fd (jadie1) #656
  • [13e00b8]: Small fix (Jadie Adams) #656
  • [ec24473]: Merge branch 'master' into usecases (Alan Morris) #656
  • [b219365]: Add getFileList api to DatasetUtils (Oleks Korshak) #656
  • [c60e426]: Use dataset versioning and add documentation with example on modifying dataset (Oleks Korshak) #656
  • [2d84677]: improve uploadDataset API to skip existing files rather than failing when reuploading (Oleks Korshak) #656
  • [e540aaf]: cleanup ellipsoid use case logic, replace with new zips (Oleks Korshak) #656
  • [b30d321]: Merge branch 'dataset_versioning' into usecases (Oleks Korshak) #656
  • [cefbed2]: Merge branch 'master' into usecases (Oleks Korshak) #656
Assets 3

@akenmorris akenmorris released this Jun 15, 2020 · 832 commits to master since this release

Fixes

  • ShapeWorksStudio: Fixed crash when importing data on a new/blank project.

See here for full release notes from the 5.4.0 release.

Assets 6

@akenmorris akenmorris released this Jun 12, 2020 · 838 commits to master since this release

What's New

  • New, flexible ShapeWorks project file format: New spreadsheet (XLSX) based project file format that can easily handle multiple shape modeling scenarios. It is now fully integrated in Studio. See the ellipsoid studio example for an example.
  • Exporting shape parameters: Added PCA Raw Component Score Export to Studio.
  • New Getting Started documentation: New Getting started documentation that goes over shape modeling workflow documentation, different ShapeWorks interfaces with a video illustration for Studio.
  • Lower memory footprint and faster optimization: ShapeWorks is now using OpenVDB, a more memory-efficient data structure, for signed distance transforms. Along with other refactoring and code optimizations, ShapeWorks now uses 85% less memory (from 57.09GB to 9.67GB in one use case). Additionally, the particles optimizer is now 2X faster.
  • Automated development builds: We now offer up-to-date development binary builds that track the master branch, available here. Please understand that these are in-progress development builds, not official releases.

Improvements

  • Improved scalability for Studio: Files now loaded on-demand as necessary.
  • Restructured datasets portal: Better and more consistent directory structure for use cases datasets. See datasets guidelines for more details. Visit our ShapeWorks Portal to register and download datasets to run use cases.
  • Lower memory footprint for estimating correspondences for new shapes on existing shape models: For <fixed_domains> usage, only distance transforms for the new shapes will be loaded.
  • Improved use case documentation: Better documentation for the RunUseCase input arguments.
  • Documentation for running existing shape models: Added instructions on how to load a pre-trained shape model without running the full pipeline.
  • Consistent cross-platform splitting direction: Correspondence point splits take a random direction, but are now consistent and repeatable across platforms for reproducible shape models.

Fixes

  • Mesh export in Studio: Changed exported meshes to be compatible with CloudCompare
Assets 6
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