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New algorithm for algae temperature limitation (optimal T)","shortMessageHtmlLink":"Update CL WQ - Feb 24"}},{"before":"9cb13875a06d0eadad5c0cb2d5e5e98c72b2b095","after":"2aacce40eb5770cab130fe401abd19c7e5cdd899","ref":"refs/heads/si3d_Hg_v1","pushedAt":"2024-02-16T17:03:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"savalbuena","name":"Sergio Valbuena","path":"/savalbuena","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65628504?s=80&v=4"},"commit":{"message":"Publish V1 Hg Model\n\n1. makefile:\n- Now includes the WQ and Hg modules within the omp compilation (compilation method used).\n2. SampleFiles\\si3d_wq_inp_master\n- Now includes more parameters needed within the mercury model.\n3. si3d\n- Increased max number of time steps allowed\n4. ecomod\n- Removed subroutines from the WQ module and put them in a new WQ module.\n- Included use si3d_hg\n- Created variables for settling of algae and POM\n- Added reading of WQ_inp file to include parameters for mercury module\n- modified the initial conditions file. This file now must include a header line indicating the variable's name.\n- The variable's name within the init file must match the predefined names for the WQ module. It allows to know which WQ parameters are modeled and the order within the init file, which assigns the order for the tracer matrix.\n- Modified the way WQ parameters are allocated in the tracer matrix. The order now does not matter and is more generalized.\n- Created the call for the source/sink of the mercury module\n5. Hg\n- Created module and subroutines to estimate MeHg, HgII, and Hg0 sources and sinks. This is the first version, and it is assumed to be instantaneous partitioning. Thus, only total mercury variables are modeled, and the others are estimated based on partitioning coefficients.\n6. Procedures\n- The reading of the concentration for sediments is as concentrations; thus, estimates of resuspension must be multiplied by density and fraction.\n- Added settling velocity estimates at each time step to add to the inertial component of the Navier Stokes\n- The settling velocity was added as a variable for sediments and constant for all other particulate components of the WQ module (e.g., POC, PON..). The settling of algae is now an input from WQ_inp called vspa and it is assumed equal for all algae classes. The settling of POC is also an input from WQ_inp. The rest of the particulates assume a settling of R_settl (input from WQ_inp)\n- Generalized the solution of the bottom cell (sediment layer). Before, it was limited to the suspended sediment variables\n7 sed\n- Modified the condition that deposition can not be larger than the concentration times the variation within 1 time step.\n- Created a global variable to obtain the general erosion flux for the Hg Module. The erosion subroutine within the sed module is estimated by multiplying the sediment density and fraction.\n- created subroutine fvs_ss to estimate the settling velocity of sediments used within the procedures.\n- Added conditionals for a different Rep from Eugene's work, Reardon, who complemented and tested the extension of Garcia's paper.\n- Added resuspension of cohesive sediments\n8 Types\n- Added  global variables needed for the Hg Module\n- Added sediment fraction and density as global variables\n9 utils\n- deleted \";\" as it is not necessary in Fortran.  This comes from Matlab writing.\n10 wq\n- I created the whole module, transferring the subroutines for the WQ module. Previously located within ecomod.","shortMessageHtmlLink":"Publish V1 Hg Model"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEWzBEkAA","startCursor":null,"endCursor":null}},"title":"Activity · SI3DL/psi3d"}