Skip to content
master
Go to file
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
MSA
 
 
 
 
 
 
SNP
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

README.md

GCModeller Sequence Utility Tools

Pfam-hmm

Hidden Markov Model for Pfam-A

HMM data can be download from EMBL ftp website:

ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam29.0

Sequence repeats

Drawing the sequence logo

1.Multiple alignment

Multiple align of the sequence, this can be applied by the clustal program

2.Draw logo

Using /logo command from the seequence CLI tools to draw the sequence logo from the multiple sequence alignment result

G:\4.15\MEME\footprints>seqtools ? /logo

Help for command '/logo':

  Information:
  Usage:        F:\GCModeller\GCModeller-x64\seqtools.exe /logo /in <clustal.fasta> [/out <out.png>]
  Example:      seqtools /logo

You can’t perform that action at this time.