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.Rd files for new functions.

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1 parent 08bdcfb commit 4b3ebb9a96e7aee1ecf0cb07acac91cded0f727e AAMargolin committed Oct 6, 2012
Showing with 57 additions and 0 deletions.
  1. +2 −0 DESCRIPTION
  2. +2 −0 NAMESPACE
  3. +30 −0 man/loadMetabricTestData_federation.Rd
  4. +23 −0 man/loadMetabricTrainingData_federation.Rd
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2 DESCRIPTION
@@ -29,4 +29,6 @@ Collate:
'restoreSessionAndCreateNewModelFromOSModel.R'
'retrainAllOSModels.R'
'retrainOSModel.R'
+ 'loadMetabricTestData_federation.R'
+ 'loadMetabricTrainingData_federation.R'
Packaged: 2012-09-20 19:18:16 UTC; sagebio
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2 NAMESPACE
@@ -1,7 +1,9 @@
export(DemoModel)
export(evaluateMetabricModelFromCode)
export(loadMetabricTestData)
+export(loadMetabricTestData_federation)
export(loadMetabricTrainingData)
+export(loadMetabricTrainingData_federation)
export(restoreSessionAndCreateNewModelFromOSModel)
export(retrainAllOSModels)
export(retrainOSModel)
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30 man/loadMetabricTestData_federation.Rd
@@ -0,0 +1,30 @@
+\name{loadMetabricTestData_federation}
+\alias{loadMetabricTestData_federation}
+\title{Load test data for the metabric competition}
+\usage{
+ loadMetabricTestData_federation(loadSurvData = FALSE)
+}
+\arguments{
+ \item{loadSurvData}{specifies if survival data is loaded.
+ Should be set to false to users who do not have access to
+ validation data. Set to true for automated model
+ evaluation harness.}
+}
+\value{
+ a list with elements: exprData, containing an
+ ExpressionSet of gene expression features; copyData,
+ containing an ExpressionSet of copy number features;
+ clinicalFeaturesData, containing an AnnotatedDataFrame of
+ clinical covariates; and clinicalSurvData, if
+ loadSurvData=TRUE, containing a Surv object of survival
+ times and censor values.
+}
+\description{
+ Loads data for gene expression, copy number, clinical
+ covariates and clinical survival times for the test
+ dataset used to evlauate model scores.
+}
+\author{
+ Adam Margolin
+}
+
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23 man/loadMetabricTrainingData_federation.Rd
@@ -0,0 +1,23 @@
+\name{loadMetabricTrainingData_federation}
+\alias{loadMetabricTrainingData_federation}
+\title{Load training data for the metabric competition}
+\usage{
+ loadMetabricTrainingData_federation()
+}
+\value{
+ a list with elements: exprData, containing an
+ ExpressionSet of gene expression features; copyData,
+ containing an ExpressionSet of copy number features;
+ clinicalFeaturesData, containing an AnnotatedDataFrame of
+ clinical covariates; and clinicalSurvData, containing a
+ Surv object of survival times and censor values.
+}
+\description{
+ Loads data for gene expression, copy number, clinical
+ covariates and clinical survival times for the training
+ dataset used to train predicitve models.
+}
+\author{
+ Adam Margolin
+}
+

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