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| parent: "syn20400157" | |
| path_to_markdown: "inst/using-the-dccvalidator-app-amp-ad.Rmd" | |
| study_table: "syn11363298" | |
| samples_table: "syn21578908" | |
| annotations_table: "syn10242922" | |
| annotations_link: "https://shinypro.synapse.org/users/nsanati/annotationUI/" | |
| templates_link: "https://www.synapse.org/#!Synapse:syn18512044" | |
| study_link_animal: "https://adknowledgeportal.synapse.org/#/Explore/Studies?Study=syn8391648" | |
| study_link_human: "https://adknowledgeportal.synapse.org/#/Explore/Studies?Study=syn3159438" | |
| study_link_ref: "" | |
| teams: | |
| - "273957" | |
| templates: | |
| manifest_template: "syn20820080" | |
| individual_templates: | |
| human: "syn12973254" | |
| mouse or other animal model: "syn12973253" | |
| biospecimen_templates: | |
| mouse or other animal model: "syn12973252" | |
| human: "syn12973252" | |
| drosophila: "syn20673251" | |
| assay_templates: | |
| rnaSeq: "syn12973256" | |
| proteomics: "syn12973255" | |
| species_list: | |
| - "mouse or other animal model" | |
| - "human" | |
| - "drosophila" | |
| complete_columns: | |
| manifest: | |
| - "parent" | |
| - "path" | |
| individual: | |
| - "individualID" | |
| biospecimen: | |
| - "individualID" | |
| - "specimenID" | |
| assay: | |
| - "specimenID" | |
| contact_email: "karawoo@synapse.org" | |
| amp-ad: | |
| parent: "syn21643404" | |
| annotations_table: | |
| - "syn10242922" | |
| - "syn21459391" | |
| annotations_link: "https://shinypro.synapse.org/users/kwoo/amp-ad-metadata-dictionary/" | |
| teams: | |
| - "3320424" | |
| - "3405451" | |
| study_link_ref: "https://adknowledgeportal.synapse.org/#/DataAccess/AcknowledgementStatements" | |
| species_list: | |
| - "human" | |
| - "drosophila" | |
| - "MODEL-AD mouse model" | |
| - "other mouse or animal model" | |
| templates: | |
| individual_templates: | |
| human: "syn12973254" | |
| other mouse or animal model: "syn12973253" | |
| MODEL-AD mouse model: "syn21084071" | |
| biospecimen_templates: | |
| human: "syn12973252" | |
| other mouse or animal model: "syn12973252" | |
| MODEL-AD mouse model: "syn12973252" | |
| drosophila: "syn20673251" | |
| assay_templates: | |
| ATACseq: "syn22024364" | |
| autorad: "syn22087295" | |
| immunoassay: "syn22117582" | |
| proteomics: "syn12973255" | |
| single cell RNAseq: "syn21018360" | |
| wholeGenomeSeq: "syn21018358" | |
| wholeExomeSeq: "syn21078272" | |
| NanoString: "syn21082744" | |
| snpArray: "syn21372586" | |
| TMT quantitation: "syn21433357" | |
| methylationArray: "syn22036881" | |
| MRI: "syn22087332" | |
| PET: "syn22087299" | |
| complete_columns: | |
| manifest: | |
| - "consortium" | |
| - "study" | |
| - "grant" | |
| - "fileFormat" | |
| - "parent" | |
| - "path" | |
| individual: | |
| - "individualID" | |
| biospecimen: | |
| - "individualID" | |
| - "specimenID" | |
| assay: | |
| - "specimenID" | |
| contact_email: "AMPAD_SageAdmin@synapse.org" | |
| pec: | |
| parent: "syn21763123" | |
| path_to_markdown: "inst/using-the-dccvalidator-pec.Rmd" | |
| study_table: "syn20968992" | |
| samples_table: "syn22175287" | |
| annotations_table: "syn20981788" | |
| annotations_link: "https://www.synapse.org/#!Synapse:syn20729790" | |
| templates_link: "https://www.synapse.org/#!Synapse:syn20729790" | |
| study_link_animal: "https://www.synapse.org/#!Synapse:syn4566132" | |
| study_link_human: "https://www.synapse.org/#!Synapse:syn4590909" | |
| teams: | |
| - "3323356" | |
| templates: | |
| manifest_template: "syn20782058" | |
| individual_templates: | |
| human: "syn20781820" | |
| animal: "syn21053116" | |
| biospecimen_templates: | |
| animal model: "syn20768131" | |
| human: "syn20768131" | |
| assay_templates: | |
| wholeGenomeSeq: "syn20980993" | |
| rnaSeq: "syn20768650" | |
| ATACSeq: "syn20768526" | |
| TMT quantitation: "syn21680761" | |
| HI-C: "syn21680758" | |
| snpArray: "syn21680759" | |
| ChIPSeq: "syn21861858" | |
| bisulfiteSeq: "syn23017098" | |
| species_list: | |
| - "human" | |
| - "animal model" | |
| complete_columns: | |
| manifest: | |
| - "consortium" | |
| - "study" | |
| - "grant" | |
| - "fileFormat" | |
| - "parent" | |
| - "path" | |
| individual: | |
| - "individualID" | |
| - "individualIdSource" | |
| - "species" | |
| - "reportedGender" | |
| - "postmortem" | |
| - "primaryDiagnosis" | |
| biospecimen: | |
| - "individualID" | |
| - "specimenID" | |
| - "organ" | |
| - "tissue" | |
| - "nucleicAcidSource" | |
| assay: | |
| - "specimenID" | |
| contact_email: "kelsey@synapse.org" | |
| annotations-research: | |
| parent: "syn21782020" | |
| annotations_table: | |
| - "syn10242922" | |
| - "syn21459391" | |
| annotations_link: "https://shinypro.synapse.org/users/kwoo/amp-ad-metadata-dictionary/" | |
| teams: | |
| - "3407020" | |
| - "273957" | |
| study_link_ref: "https://adknowledgeportal.synapse.org/#/DataAccess/AcknowledgementStatements" | |
| templates: | |
| assay_templates: | |
| proteomics: "syn12973255" | |
| single cell RNAseq: "syn21018360" | |
| wholeGenomeSeq: "syn21018358" | |
| wholeExomeSeq: "syn21078272" | |
| NanoString: "syn21082744" | |
| snpArray: "syn21372586" | |
| TMT quantitation: "syn21433357" | |
| complete_columns: | |
| manifest: | |
| - "consortium" | |
| - "study" | |
| - "grant" | |
| - "fileFormat" | |
| - "parent" | |
| - "path" | |
| individual: | |
| - "individualID" | |
| biospecimen: | |
| - "individualID" | |
| - "specimenID" | |
| assay: | |
| - "specimenID" |