Skip to content
@SahakyanLab

SahakyanLab

Integrative Computational Biology and Machine Learning Laboratory, University of Oxford

Popular repositories

  1. ROptimus ROptimus Public

    ROptimus: a parallel general purpose adaptive optimisation engine

    R 4

  2. GenomicPR2SimsWebApp GenomicPR2SimsWebApp Public

    Shiny interface and simple ODE-based simulation code for the genomic base composition.

    R

  3. GenomicPR2Simulations GenomicPR2Simulations Public

    Pipeline for ODE-driven simulations to explore the genomic compliance of PR-2.

    Mathematica

  4. GenomicContactDynamics GenomicContactDynamics Public

    Code for the analyses and simulations involved in the Genomic Contact Dynamics research.

    R

  5. G4Damage G4Damage Public

    Pipeline for cross mapping DNA damage with regard to G-quadruplex structures.

    R

  6. kmeRtone kmeRtone Public

    Multi-purpose and transferrable k-meric enrichment/depletion analysis software.

    R

Repositories

Showing 10 of 12 repositories
  • kmeRtone Public

    Multi-purpose and transferrable k-meric enrichment/depletion analysis software.

    R 0 GPL-3.0 0 0 0 Updated Apr 23, 2024
  • NucleicAcidsQM Public

    Research and development code for QM calculations on nucleic acids.

    R 0 GPL-3.0 0 0 0 Updated Mar 24, 2024
  • DNAkmerQM Public

    A database of electronic, topological, and QM-derived features calculated for DNA k-mers

    0 LGPL-3.0 0 0 0 Updated Mar 24, 2024
  • DNAFragility_dev Public

    Research and Development Code for Ultrasound Sonication Induced DNA Breakpoints in Sequencing

    R 0 GPL-3.0 0 0 0 Updated Mar 6, 2024
  • DNAFragility_ML Public

    Development and application of DNA fragility prediction engine based only on sequence-context.

    R 0 GPL-3.0 0 0 0 Updated Mar 5, 2024
  • DNAfrAIlib Public

    DNA fragility associated k-meric features for genomic sequence-driven machine learning.

    R 0 GPL-3.0 0 0 0 Updated Feb 21, 2024
  • GenomicContactDynamics Public

    Code for the analyses and simulations involved in the Genomic Contact Dynamics research.

    R 0 0 0 0 Updated Aug 1, 2023
  • GenomicPR2Simulations Public

    Pipeline for ODE-driven simulations to explore the genomic compliance of PR-2.

    Mathematica 0 GPL-3.0 0 0 0 Updated Jun 9, 2023
  • ROptimus Public

    ROptimus: a parallel general purpose adaptive optimisation engine

    R 4 GPL-3.0 0 0 0 Updated Feb 2, 2023
  • GenomicPR2SimsWebApp Public

    Shiny interface and simple ODE-based simulation code for the genomic base composition.

    R 0 GPL-3.0 0 0 0 Updated Dec 23, 2022

Top languages

Loading…

Most used topics

Loading…