A tool to visualize various small RNA characteristics
Written in python3.
WebLogo 3 - NOTE: please install weblogo rather than seqlogo
signature.py by Christophe Antoniewski - to install, simply copy the
signature.py file (above) into your
~/bin/ directory (NOTE: it must be installed in this directory).
Basic usage is:
sRNAplot.py -s samplename -i input.bam
sRNAplot accepts the following additional arguments (all of which have defaults already set):
-m (minimum sRNA length, default=17)
-M (maximum sRNA length, default=35)
--seqlogo (plot separate seqlogos for sense and antisense sRNAs)
--pingpong (plot Ping-Pong overlap signature)
--distribution (plot sRNA length distribution)
--unique (plot unique reads only i.e. collapse identical reads)
-h (display help message)