Pinned

1. EBI-Metagenomics/holofood-database Public

   HoloFood is a project investigating sustainable food production through hologenomics. This Django app is the data portal where samples and other datasets from the project are made publicly available.

   Python

2. EBI-Metagenomics/notebooks Public

   MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)

   Jupyter Notebook 2 2

3. EBI-Metagenomics/mgnify-web Public

   Parent repo for MGnify's (EMBL-EBI's metagenomics platform) API and web client. Designed for local development.

   Python 3

4. EBI-Metagenomics/deciphon_web Public

   React webapp to submit and retrieve jobs from Deciphon – a protein prediction tool for nanopore reads

   JavaScript 1

5. EBI-Metagenomics/genome-search Public

   Microservice API for searching fragments against indexed genomes, using COBS. Provides the "search by gene" feature on MGnify's MAG catalogues.

   Python 1

6. F1-points-analysis Public

   How much competition was there for F1 race points in each year? A jupyter notebook analysis.

   Jupyter Notebook 1