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#write_paper
sh get_references.bash
sh mothur_raw.bash
R CMD BATCH data_wrangling.R
sh mothur_process.bash
R CMD BATCH taxonomy_wrangling.R
R -e 'install.packages("knitr"); library("knitr"); knit2html("PacBioManuscript.Rmd")'
./compile_docx.sh PacBioManuscript.md