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catalog-extras and processes updated for more external files

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tgbugs committed May 19, 2018
1 parent d502966 commit 0ac77f58a5305af021084330fbfc73f8ea6b7344
Showing with 18 additions and 2 deletions.
  1. +14 −0 catalog-extras
  2. +4 −2 docs/processes.md
@@ -1,9 +1,23 @@
<uri id="User Entered Import Resolution" name="http://protege.stanford.edu/plugins/owl/dc/terms.owl" uri="external/dc/terms.owl"/>
<uri id="User Entered Import Resolution" name="http://protege.stanford.edu/plugins/owl/dc/dcmitype.owl" uri="external/dc/dcmitype.owl"/>
<uri id="User Entered Import Resolution" name="http://protege.stanford.edu/plugins/owl/dc/dublincore.owl" uri="external/dc/dublincore.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/doid.owl" uri="external/doid.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/go.owl" uri="external/go.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/iao.owl" uri="external/iao.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl" uri="external/taxslim.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/pato.owl" uri="external/pato.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ro.owl" uri="external/ro.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ro/annotations.owl" uri="external/ro/annotations.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ro/core.owl" uri="external/ro/core.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ro/bfo-axioms.owl" uri="external/ro/bfo-axioms.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ro/bfo-classes-minimal.owl" uri="external/ro/bfo-classes-minimal.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ro/el-constraints.owl" uri="external/ro/el-constraints.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ro/go-biotic.owl" uri="external/ro/go-biotic.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ro/go_cc_import.owl" uri="external/ro/go_cc_import.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ro/go_mf_import.owl" uri="external/ro/go_mf_import.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ro/pato_import.owl" uri="external/ro/pato_import.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ro/rohom.owl" uri="external/ro/rohom.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ro/temporal-intervals.owl" uri="external/ro/temporal-intervals.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/so.owl" uri="external/so.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/uberon.owl" uri="external/uberon.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-nifstd.owl" uri="external/uberon-bridge-to-nifstd.owl"/>
@@ -76,8 +76,10 @@ mv catalog-new catalog-v001.xml
```
Local copies can be obtained using the following.
```bash
cd ttl/external/
curl --header 'Accept-Encoding: gzip' --compressed --location --remote-name-all $(cat ../../catalog-extras | cut -d'=' -f3 | cut -d'"' -f2)
cd ttl
curl --header 'Accept-Encoding: gzip' --compressed --location --create-dirs \
$(cat ../catalog-extras | cut -d'=' -f4 | cut -d'"' -f2 | sed 's/^/-o /') \
--remote-name-all $(cat ../catalog-extras | cut -d'=' -f3 | cut -d'"' -f2)
```

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