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import chain doid.owl imported from canonical iri

Following a review of doid.owl we now import it via its canonical iri.
Removed local copy of doid.owl.
Added symp-dead and trans-dead that are imported via doid, they are
imported via doid-bridge (deads from parts of the import chain we do not
control should be imported at the first point we can).
Assoc updates to catalog-extras, catalog-v001.xml, and dev-reasoner.path.
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tgbugs committed Oct 14, 2017
1 parent e63acac commit 64fe926dabe03ac4aa9352c7e39053c50ffb143d
Showing with 637 additions and 258,658 deletions.
  1. +1 −0 catalog-extras
  2. +0 −13 dev-reasoner.patch
  3. +5 −3 ttl/bridge/doid-bridge.ttl
  4. +2 −2 ttl/catalog-v001.xml
  5. +0 −258,585 ttl/external/doid.owl
  6. +374 −55 ttl/generated/doid-dead.ttl
  7. +229 −0 ttl/generated/symp-dead.ttl
  8. +26 −0 ttl/generated/trans-dead.ttl
View
@@ -1,3 +1,4 @@
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/doid.owl" uri="external/doid.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/go.owl" uri="external/go.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/iao.owl" uri="external/iao.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl" uri="external/taxslim.owl"/>
View
@@ -11,19 +11,6 @@ index 8b9ced0..1311ef4 100644
<http://ontology.neuinfo.org/NIF/ttl/external/CogPO.ttl>,
<http://ontology.neuinfo.org/NIF/ttl/NIF-Government-Granting-Agency.ttl>,
<http://ontology.neuinfo.org/NIF/ttl/NIF-Resource.ttl>,
diff --git a/ttl/bridge/doid-bridge.ttl b/ttl/bridge/doid-bridge.ttl
index 2b1542f..cc5dd6a 100644
--- a/ttl/bridge/doid-bridge.ttl
+++ b/ttl/bridge/doid-bridge.ttl
@@ -8,7 +8,7 @@
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
<http://ontology.neuinfo.org/NIF/ttl/bridge/doid-bridge.ttl> a owl:Ontology ;
- owl:imports <http://ontology.neuinfo.org/NIF/ttl/external/doid.owl>,
+ owl:imports <http://purl.obolibrary.org/obo/doid.owl>,
<http://ontology.neuinfo.org/NIF/ttl/generated/doid-dead.ttl>,
<http://ontology.neuinfo.org/NIF/ttl/nif_backend.ttl> .
diff --git a/ttl/bridge/pr-bridge.ttl b/ttl/bridge/pr-bridge.ttl
index 983a3b3..41deaef 100644
--- a/ttl/bridge/pr-bridge.ttl
@@ -8,9 +8,11 @@
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
<http://ontology.neuinfo.org/NIF/ttl/bridge/doid-bridge.ttl> a owl:Ontology ;
owl:imports <http://ontology.neuinfo.org/NIF/ttl/external/doid.owl>,
<http://ontology.neuinfo.org/NIF/ttl/generated/doid-dead.ttl>,
<http://ontology.neuinfo.org/NIF/ttl/nif_backend.ttl> .
owl:imports <http://ontology.neuinfo.org/NIF/ttl/generated/doid-dead.ttl>,
<http://ontology.neuinfo.org/NIF/ttl/generated/symp-dead.ttl>,
<http://ontology.neuinfo.org/NIF/ttl/generated/trans-dead.ttl>,
<http://ontology.neuinfo.org/NIF/ttl/nif_backend.ttl>,
<http://purl.obolibrary.org/obo/doid.owl> .
### Annotations
View
@@ -47,7 +47,6 @@
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/bridge/uberon-bridge.ttl" uri="bridge/uberon-bridge.ttl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/external/CogPO.ttl" uri="external/CogPO.ttl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/external/cogat_v0.3.owl" uri="external/cogat_v0.3.owl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/external/doid.owl" uri="external/doid.owl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/external/pr.owl" uri="external/pr.owl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/generated/NIF-NIFSTD-mapping.ttl" uri="generated/NIF-NIFSTD-mapping.ttl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/generated/NIF-Neuron-HBP-cell-import.ttl" uri="generated/NIF-Neuron-HBP-cell-import.ttl"/>
@@ -85,6 +84,8 @@
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/generated/pato-dead.ttl" uri="generated/pato-dead.ttl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/generated/pr-dead.ttl" uri="generated/pr-dead.ttl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/generated/so-dead.ttl" uri="generated/so-dead.ttl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/generated/symp-dead.ttl" uri="generated/symp-dead.ttl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/generated/trans-dead.ttl" uri="generated/trans-dead.ttl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/generated/swanson_hierarchies.ttl" uri="generated/swanson_hierarchies.ttl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/generated/tax-dead.ttl" uri="generated/tax-dead.ttl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/generated/uberon-dead.ttl" uri="generated/uberon-dead.ttl"/>
@@ -118,7 +119,6 @@
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/utility/NIF-Investigation-view.ttl" uri="utility/NIF-Investigation-view.ttl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/utility/NIF-Resource-view.ttl" uri="utility/NIF-Resource-view.ttl"/>
<uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/ttl/utility/NIF-Subcellular-view.ttl" uri="utility/NIF-Subcellular-view.ttl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/doid.owl" uri="external/doid.owl"/>
<uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/pr.owl" uri="external/pr.owl"/>
<uri id="User Entered Import Resolution" name="http://www.cognitiveatlas.org/ontology/cogat.owl" uri="external/cogat_v0.3.owl"/>
</catalog>
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