From 0dd4e78d682ce2af4154dd40bd498f9823d80aa1 Mon Sep 17 00:00:00 2001
From: Phil Ewels <phil.ewels@scilifelab.se>
Date: Wed, 14 Dec 2016 15:51:57 +0100
Subject: [PATCH] Define default params.splicesites.

---
 main.nf | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/main.nf b/main.nf
index 8d98d653d..6ed40274c 100644
--- a/main.nf
+++ b/main.nf
@@ -30,6 +30,7 @@ params.fasta = params.genome ? params.genomes[ params.genome ].fasta ?: false :
 params.gtf = params.genome ? params.genomes[ params.genome ].gtf ?: false : false
 params.bed12 = params.genome ? params.genomes[ params.genome ].bed12 ?: false : false
 params.hisat2_index = params.genome ? params.genomes[ params.genome ].hisat2 ?: false : false
+params.splicesites = false
 params.download_hisat2index = false
 params.download_fasta = false
 params.download_gtf = false
@@ -43,7 +44,7 @@ params.rlocation = false
 if (params.rlocation){
     nxtflow_libs = file(params.rlocation)
     nxtflow_libs.mkdirs()
-} 
+}
   
 def single
 params.sampleLevel = false