Adhoc software "packaged" for the ancient and deprecated "module system" (http://modules.sf.net/)
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AlienTrimmer
CRISP
GATK
MuTect
OLB
RNASeQC
VarScan
bamtools
bcbio.variation
bcftools
bgzip
bismark
bowtie2
clc-adapter-trim
clojure
cmake
cutadapt
deactivated/ant
drmaa
fastqc
fastqscreen
fastx_toolkit
grabix
htseq
igvtools
lein
maven
mosaik-aligner
ngsrich
picard
samtools
seqtk
snpEff
subread
tabix
tophat
trim_galore
trimmomatic
ucsc_tools
vcflib
vcftools
README.md

README.md

This is just a placeholder for software "packaged" using the ancient and horribly deprecated module system:

http://modules.sf.net

The modules shown here are tailored for our specific environment and no support will be offered.

*** Use it at your own risk ***

You might want to adjust your MODULEPATH environment variable to load those custom/experimental modules, e.g.:

export MODULEPATH=$MODULEPATH:/bubo/home/h5/roman/opt/modules

http://www.pdc.kth.se/resources/software/userenvironment/modules http://www.uppmax.uu.se/faq/software