diff --git a/benchmarks/AutomaticDifferentiationSparse/BrusselatorSparseAD.jmd b/benchmarks/AutomaticDifferentiationSparse/BrusselatorSparseAD.jmd new file mode 100644 index 000000000..6dbd76751 --- /dev/null +++ b/benchmarks/AutomaticDifferentiationSparse/BrusselatorSparseAD.jmd @@ -0,0 +1,169 @@ +--- +title: Sparse AD benchmarks +author: Guillaume Dalle +--- + +```julia +using ADTypes +using LinearAlgebra, SparseArrays +using BenchmarkTools, DataFrames +import DifferentiationInterface as DI +import SparseDiffTools as SDT +using SparseConnectivityTracer: TracerSparsityDetector +using SparseMatrixColorings: GreedyColoringAlgorithm +using Symbolics: SymbolicsSparsityDetector +using Test +``` + +## Definitions + +```julia +const N = 32 +const xyd_brusselator = range(0; stop=1, length=N) +const p = (3.4, 1.0, 10.0, step(xyd_brusselator)) + +brusselator_f(x, y, t) = (((x - 0.3)^2 + (y - 0.6)^2) <= 0.1^2) * (t >= 1.1) * 5.0 +limit(a, N) = + if a == N + 1 + 1 + elseif a == 0 + N + else + a + end; +``` + +```julia +function brusselator_2d_loop(du, u, p, t) + A, B, alpha, dx = p + alpha = alpha / dx^2 + @inbounds for I in CartesianIndices((N, N)) + i, j = Tuple(I) + x, y = xyd_brusselator[I[1]], xyd_brusselator[I[2]] + ip1, im1, jp1, jm1 = limit(i + 1, N), + limit(i - 1, N), limit(j + 1, N), + limit(j - 1, N) + du[i, j, 1] = + alpha * + (u[im1, j, 1] + u[ip1, j, 1] + u[i, jp1, 1] + u[i, jm1, 1] - 4u[i, j, 1]) + + B + + u[i, j, 1]^2 * u[i, j, 2] - (A + 1) * u[i, j, 1] + brusselator_f(x, y, t) + du[i, j, 2] = + alpha * + (u[im1, j, 2] + u[ip1, j, 2] + u[i, jp1, 2] + u[i, jm1, 2] - 4u[i, j, 2]) + + A * u[i, j, 1] - u[i, j, 1]^2 * u[i, j, 2] + end +end; +``` + +```julia +function init_brusselator_2d(xyd) + N = length(xyd) + u = zeros(N, N, 2) + for I in CartesianIndices((N, N)) + x = xyd[I[1]] + y = xyd[I[2]] + u[I, 1] = 22 * (y * (1 - y))^(3 / 2) + u[I, 2] = 27 * (x * (1 - x))^(3 / 2) + end + return u +end; +``` + +```julia +x0 = init_brusselator_2d(xyd_brusselator); +y0 = similar(x0); + +f!(y, x) = brusselator_2d_loop(y, x, p, 0.0); +``` + +## Sparsity detection + +```julia +S1 = ADTypes.jacobian_sparsity(f!, y0, x0, TracerSparsityDetector()) +S2 = ADTypes.jacobian_sparsity(f!, y0, x0, SymbolicsSparsityDetector()) +@test S1 == S2 +``` + +```julia +td1 = @belapsed ADTypes.jacobian_sparsity($f!, $y0, $x0, TracerSparsityDetector()) +println("Sparsity detection with SparseConnectivityTracer: $td1 s") +``` + +```julia +td2 = @belapsed ADTypes.jacobian_sparsity($f!, $y0, $x0, SymbolicsSparsityDetector()) +println("Sparsity detection with Symbolics: $td2 s") +``` + +```julia +println("Speedup from new sparsity detection method (>1 is better): $(td2 / td1)") +``` + +## Coloring + +```julia +S = S1 +c1 = ADTypes.column_coloring(S, GreedyColoringAlgorithm()) +c2 = SDT.matrix_colors(S) +@test c1 == c2 +``` + +```julia +tc1 = @belapsed ADTypes.column_coloring($S, GreedyColoringAlgorithm()) +println("Coloring with SparseMatrixColorings: $tc1 s") +``` + +```julia +tc2 = @belapsed SDT.matrix_colors($S) +println("Coloring with SDT: $tc2 s") +``` + +```julia +println("Speedup from new coloring method (>1 is better): $(tc2 / tc1)") +``` + +## Compressed differentiation + +```julia +backend = AutoSparse( + AutoForwardDiff(); + sparsity_detector=TracerSparsityDetector(), + coloring_algorithm=GreedyColoringAlgorithm(), +); +``` + +```julia +extras = DI.prepare_jacobian(f!, similar(y0), backend, x0); +J1 = DI.jacobian!(f!, similar(y0), similar(S, eltype(x0)), backend, x0, extras) + +cache = SDT.sparse_jacobian_cache( + backend, SDT.JacPrototypeSparsityDetection(; jac_prototype=S), f!, similar(y0), x0 +); +J2 = SDT.sparse_jacobian!(similar(S, eltype(x0)), backend, cache, f!, similar(y0), x0) + +@test J1 == J2 +``` + +```julia +tj1 = @belapsed DI.jacobian!($f!, _y, _J, $backend, $x0, _extras) evals = 1 samples = 100 setup = ( + _y = similar(y0); + _J = similar(S, eltype(x0)); + _extras = DI.prepare_jacobian(f!, similar(y0), backend, x0) +) +println("Jacobian with DifferentiationInterface: $tj1 s") +``` + +```julia +tj2 = @belapsed SDT.sparse_jacobian!(_J, $backend, _cache, $f!, _y, x0) evals = 1 samples = 100 setup = ( + _y = similar(y0); + _J = similar(S, eltype(x0)); + _cache = SDT.sparse_jacobian_cache( + backend, SDT.JacPrototypeSparsityDetection(; jac_prototype=S), f!, similar(y0), x0 + ) +) +println("Jacobian with SparseDiffTools: $tj2 s") +``` + +```julia +println("Speedup from new differentiation method (>1 is better): $(tj2 / tj1)") +``` \ No newline at end of file diff --git a/benchmarks/AutomaticDifferentiationSparse/Manifest.toml b/benchmarks/AutomaticDifferentiationSparse/Manifest.toml new file mode 100644 index 000000000..bf5b602ae --- /dev/null +++ b/benchmarks/AutomaticDifferentiationSparse/Manifest.toml @@ -0,0 +1,1214 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.10.4" +manifest_format = "2.0" +project_hash = "d1d65afe9097247383ef72152b831d6cc6cd3ff6" + 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