diff --git a/.buildkite/run_tutorial.yml b/.buildkite/run_tutorial.yml index d6b2d029..e781138d 100644 --- a/.buildkite/run_tutorial.yml +++ b/.buildkite/run_tutorial.yml @@ -1,6 +1,7 @@ agents: queue: "juliaecosystem" sandbox.jl: true + arch: "x86_64" # This is a pipeline that weaves a tutorial, then uploads the resultant # .PDF and other reports as (buildkite, not Julia) artifacts. The `coppermind` @@ -18,7 +19,7 @@ steps: - BUILDKITE_S3_SECRET_ACCESS_KEY="U2FsdGVkX1+SPF81nkK7KQ64DsafSl0qq2iG7BsQs1xlTYEtZV3MqQl3l/NWaiocaEywZZFbAB5zpnKPD0xHTQ==" - BUILDKITE_S3_DEFAULT_REGION="U2FsdGVkX1/cORlxhXcxhja2JkqC0f8RmaGYxvGBbEg=" - JuliaCI/julia#v1: - version: 1.6 + version: 1.8 - staticfloat/sandbox: rootfs_url: "https://jc-rootfs-images.s3.amazonaws.com/aws_uploader-2021-11-12.x86_64.tar.gz" rootfs_treehash: "986217e5b36efd3b3b91ed90df8e36d628cf543f" @@ -63,7 +64,7 @@ steps: files: - .buildkite/ssh_deploy.key - JuliaCI/julia#v1: - version: 1.7 + version: 1.8 - staticfloat/sandbox: rootfs_url: "https://jc-rootfs-images.s3.amazonaws.com/aws_uploader-2021-11-12.x86_64.tar.gz" rootfs_treehash: "986217e5b36efd3b3b91ed90df8e36d628cf543f" diff --git a/.buildkite/test_sciml.yml b/.buildkite/test_sciml.yml index 8c6ecb59..ca906117 100644 --- a/.buildkite/test_sciml.yml +++ b/.buildkite/test_sciml.yml @@ -1,11 +1,12 @@ agents: queue: "juliaecosystem" + arch: "x86_64" steps: - - label: ":julia: Run tests on 1.7" + - label: ":julia: Run tests on 1.8" plugins: - JuliaCI/julia#v1: - version: 1.7 + version: 1.8 - JuliaCI/julia-test#v1: timeout_in_minutes: 20 artifact_paths: diff --git a/README.md b/README.md index f4a747d9..a2dff069 100644 --- a/README.md +++ b/README.md @@ -52,6 +52,7 @@ SciMLTutorials.open_notebooks() - [Tutorial on using spatial SSAs in DiffEqJump](http://tutorials.sciml.ai/html/jumps/spatial.html) - [Kepler Problem Orbit](http://tutorials.sciml.ai/html/models/05-kepler_problem.html) - [Spiking Neural Systems](http://tutorials.sciml.ai/html/models/08-spiking_neural_systems.html) + - [Outer Solar System](http://tutorials.sciml.ai/html/models/05-outer_solar_system.html) - Advanced ODE Features - [Feagin's Order 10, 12, and 14 Methods](http://tutorials.sciml.ai/html/ode_extras/01-feagin.html) - [Finding Maxima and Minima of DiffEq Solutions](http://tutorials.sciml.ai/html/ode_extras/02-ode_minmax.html) diff --git a/src/SciMLTutorials.jl b/src/SciMLTutorials.jl index 8d5c0c46..dd1e9c6d 100644 --- a/src/SciMLTutorials.jl +++ b/src/SciMLTutorials.jl @@ -8,12 +8,12 @@ latexfile = joinpath(@__DIR__, "..", "templates", "julia_tex.tpl") default_builds = (:script,:github) function weave_file(folder,file,build_list=default_builds) - target = joinpath(repo_directory, "tutorials", folder, file) + target = joinpath(folder, file) @info("Weaving $(target)") - if isfile(joinpath(repo_directory, "tutorials", folder, "Project.toml")) + if isfile(joinpath(folder, "Project.toml")) @info("Instantiating", folder) - Pkg.activate(joinpath(repo_directory,"tutorials", folder)) + Pkg.activate(joinpath(folder)) Pkg.instantiate() Pkg.build() @@ -66,7 +66,7 @@ function weave_all(build_list=default_builds) end function weave_folder(folder,build_list=default_builds) - for file in readdir(joinpath(repo_directory,"tutorials",folder)) + for file in readdir(joinpath(folder)) # Skip non-`.jmd` files if !endswith(file, ".jmd") continue diff --git a/tutorials/models/05-outer_solar_system.jmd b/tutorials/models/05-outer_solar_system.jmd new file mode 100644 index 00000000..bb1490c1 --- /dev/null +++ b/tutorials/models/05-outer_solar_system.jmd @@ -0,0 +1,84 @@ +--- +title: The Outer Solar System +author: Yingbo Ma, Chris Rackauckas +--- + +## Data + + +The chosen units are: masses relative to the sun, so that the sun has mass $1$. We have taken $m_0 = 1.00000597682$ to take account of the inner planets. Distances are in astronomical units , times in earth days, and the gravitational constant is thus $G = 2.95912208286 \cdot 10^{-4}$. + +| planet | mass | initial position | initial velocity | +| --- | --- | --- | --- | +| Jupiter | $m_1 = 0.000954786104043$ | | +| Saturn | $m_2 = 0.000285583733151$ | | +| Uranus | $m_3 = 0.0000437273164546$ | | +| Neptune | $m_4 = 0.0000517759138449$ | | +| Pluto | $ m_5 = 1/(1.3 \cdot 10^8 )$ | | + +The data is taken from the book "Geometric Numerical Integration" by E. Hairer, C. Lubich and G. Wanner. + +```julia +using Plots, OrdinaryDiffEq, ModelingToolkit +gr() + +G = 2.95912208286e-4 +M = [1.00000597682, 0.000954786104043, 0.000285583733151, 0.0000437273164546, 0.0000517759138449, 1/1.3e8] +planets = ["Sun", "Jupiter", "Saturn", "Uranus", "Neptune", "Pluto"] + +pos = [0.0 -3.5023653 9.0755314 8.310142 11.4707666 -15.5387357 + 0.0 -3.8169847 -3.0458353 -16.2901086 -25.7294829 -25.2225594 + 0.0 -1.5507963 -1.6483708 -7.2521278 -10.8169456 -3.1902382] +vel = [0.0 0.00565429 0.00168318 0.00354178 0.0028893 0.00276725 + 0.0 -0.0041249 0.00483525 0.00137102 0.00114527 -0.00170702 + 0.0 -0.00190589 0.00192462 0.00055029 0.00039677 -0.00136504] +tspan = (0.0, 200_000.0) +``` + +The N-body problem's Hamiltonian is + +$$H(p,q) = \frac{1}{2}\sum_{i=0}^{N}\frac{p_{i}^{T}p_{i}}{m_{i}} - G\sum_{i=1}^{N}\sum_{j=0}^{i-1}\frac{m_{i}m_{j}}{\left\lVert q_{i}-q_{j} \right\rVert}$$ + +Here, we want to solve for the motion of the five outer planets relative to the sun, namely, Jupiter, Saturn, Uranus, Neptune and Pluto. + +```julia +const ∑ = sum +const N = 6 +@variables t u(t)[1:3, 1:N] +u = collect(u) +D = Differential(t) +potential = -G*∑(i->∑(j->(M[i]*M[j])/√(∑(k->(u[k, i]-u[k, j])^2, 1:3)), 1:i-1), 2:N) +``` + +## Hamiltonian System + +`NBodyProblem` constructs a second order ODE problem under the hood. We know that a Hamiltonian system has the form of + +$$\dot{p} = -H_{q}(p,q)\quad \dot{q}=H_{p}(p,q)$$ + +For an N-body system, we can symplify this as: + +$$\dot{p} = -\nabla{V}(q)\quad \dot{q}=M^{-1}p.$$ + +Thus $\dot{q}$ is defined by the masses. We only need to define $\dot{p}$, and this is done internally by taking the gradient of $V$. Therefore, we only need to pass the potential function and the rest is taken care of. + +```julia +eqs = vec(@. D(D(u))) .~ .- ModelingToolkit.gradient(potential, vec(u)) ./ repeat(M, inner=3) +@named sys = ODESystem(eqs, t) +ss = structural_simplify(sys) +prob = ODEProblem(ss, [vec(u .=> pos); vec(D.(u) .=> vel)], tspan) +sol = solve(prob, Tsit5()); +``` + +```julia +plt = plot() +for i in 1:N + plot!(plt, sol, idxs=(u[:, i]...,), lab = planets[i]) +end +plot!(plt; xlab = "x", ylab = "y", zlab = "z", title = "Outer solar system") +``` + +```julia, echo = false, skip="notebook" +using SciMLTutorials +SciMLTutorials.tutorial_footer(WEAVE_ARGS[:folder],WEAVE_ARGS[:file]) +``` diff --git a/tutorials/models/Manifest.toml b/tutorials/models/Manifest.toml index 737110f5..16edcc24 100644 --- a/tutorials/models/Manifest.toml +++ b/tutorials/models/Manifest.toml @@ -1,131 +1,235 @@ # This file is machine-generated - editing it directly is not advised [[AbstractAlgebra]] -deps = ["InteractiveUtils", "LinearAlgebra", "Markdown", "Random", "RandomExtensions", "SparseArrays", "Test"] -git-tree-sha1 = 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-git-tree-sha1 = "97964dc5503a7c65b7d0f661965e297629f7b533" -uuid = "b630d9fa-e28e-4980-896d-83ce5e2106b2" -version = "0.2.5" +[[CloseOpenIntervals]] +deps = ["ArrayInterface", "Static"] +git-tree-sha1 = "5522c338564580adf5d58d91e43a55db0fa5fb39" +uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" +version = "0.1.10" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -134,16 +238,22 @@ uuid = "944b1d66-785c-5afd-91f1-9de20f533193" version = "0.7.0" [[ColorSchemes]] -deps = ["ColorTypes", "Colors", "FixedPointNumbers", "Random", "StaticArrays"] -git-tree-sha1 = "c8fd01e4b736013bc61b704871d20503b33ea402" +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "Random"] +git-tree-sha1 = "1fd869cc3875b57347f7027521f561cf46d1fcd8" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.12.1" +version = "3.19.0" [[ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "024fe24d83e4a5bf5fc80501a314ce0d1aa35597" +git-tree-sha1 = 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["MacroTools", "Test"] @@ -175,19 +285,36 @@ version = "0.3.0" [[Compat]] deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] -git-tree-sha1 = "e4e2b39db08f967cc1360951f01e8a75ec441cab" +git-tree-sha1 = "78bee250c6826e1cf805a88b7f1e86025275d208" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "3.30.0" +version = "3.46.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "0.5.2+0" + +[[ComponentArrays]] +deps = ["ArrayInterface", "ChainRulesCore", "LinearAlgebra", "Requires"] +git-tree-sha1 = "1667973b9a342f0b2e790f9a172af2412cbc182b" +uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" +version = "0.13.2" + +[[CompositeTypes]] +git-tree-sha1 = "d5b014b216dc891e81fea299638e4c10c657b582" +uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" +version = "0.1.2" + +[[CompositionsBase]] +git-tree-sha1 = "455419f7e328a1a2493cabc6428d79e951349769" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.1" [[Conda]] -deps = ["JSON", "VersionParsing"] -git-tree-sha1 = "299304989a5e6473d985212c28928899c74e9421" +deps = ["Downloads", "JSON", "VersionParsing"] +git-tree-sha1 = "6e47d11ea2776bc5627421d59cdcc1296c058071" uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" -version = "1.5.2" +version = "1.7.0" [[ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -197,20 +324,31 @@ version = "0.1.2" [[ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "1dc43957fb9a1574fa1b7a449e101bd1fd3a9fb7" +git-tree-sha1 = "fb21ddd70a051d882a1686a5a550990bbe371a95" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.2.1" +version = "1.4.1" + +[[ContextVariablesX]] +deps = ["Compat", "Logging", "UUIDs"] +git-tree-sha1 = "8ccaa8c655bc1b83d2da4d569c9b28254ababd6e" +uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" +version = "0.1.2" [[Contour]] -deps = ["StaticArrays"] -git-tree-sha1 = "9f02045d934dc030edad45944ea80dbd1f0ebea7" +git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.5.7" +version = "0.6.2" + +[[CpuId]] +deps = ["Markdown"] +git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" +uuid = "adafc99b-e345-5852-983c-f28acb93d879" +version = "0.3.1" [[Crayons]] -git-tree-sha1 = "3f71217b538d7aaee0b69ab47d9b7724ca8afa0d" +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.0.4" +version = "4.1.1" [[Cuba]] deps = ["Cuba_jll", "LinearAlgebra"] @@ -220,9 +358,9 @@ version = "2.2.0" [[Cuba_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "50beb435c4a92a6a60c4fc62710520f47ce5770c" +git-tree-sha1 = "d1a097bc5d05f54c2705fcea123b64d303ac659c" uuid = "3bed1096-5ab2-53a1-92e2-6c1cc31d0f4b" -version = "4.2.1+0" +version = "4.2.2+1" [[Cubature]] deps = ["Cubature_jll"] @@ -232,26 +370,26 @@ version = "1.5.1" [[Cubature_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "99dfeb3678a39bcc50890ff4fe1cee72a51e9180" +git-tree-sha1 = "0fe9efb84e3eb7b14f885a95aaa0ed50c7e839c8" uuid = "7bc98958-0e37-5d67-a6ac-a3a19030071a" -version = "1.0.4+0" +version = "1.0.5+0" [[DataAPI]] -git-tree-sha1 = "dfb3b7e89e395be1e25c2ad6d7690dc29cc53b1d" +git-tree-sha1 = "fb5f5316dd3fd4c5e7c30a24d50643b73e37cd40" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.6.0" +version = "1.10.0" [[DataInterpolations]] -deps = ["ChainRulesCore", "LinearAlgebra", "Optim", "RecipesBase", "RecursiveArrayTools", "Reexport"] -git-tree-sha1 = "75b89fbfa3a5be3ee10890aa6d801214dd808f96" +deps = ["ChainRulesCore", "LinearAlgebra", "Optim", "RecipesBase", "RecursiveArrayTools", "Reexport", "RegularizationTools", "Symbolics"] +git-tree-sha1 = "cd5e1d85ca89521b7df86eb343bb129799d92b15" uuid = "82cc6244-b520-54b8-b5a6-8a565e85f1d0" -version = "3.3.1" +version = "3.10.1" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "4437b64df1e0adccc3e5d1adbc3ac741095e4677" +git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.9" +version = "0.18.13" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -262,57 +400,62 @@ version = "1.0.0" deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +[[DefineSingletons]] +git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" +uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" +version = "0.1.2" + [[DelayDiffEq]] -deps = ["DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "NonlinearSolve", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "UnPack"] -git-tree-sha1 = "3877840e5d9ca88b59a66c36e1f4208515e6a115" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "NonlinearSolve", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "UnPack"] +git-tree-sha1 = "65445e47be74d38ea9317995400f004bbbb1dd32" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.31.0" +version = "5.37.1" [[DelimitedFiles]] deps = ["Mmap"] uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" +[[DensityInterface]] +deps = ["InverseFunctions", "Test"] +git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" +uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" +version = "0.4.0" + [[DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "FastBroadcast", "FunctionWrappers", "IterativeSolvers", "LabelledArrays", "LinearAlgebra", "Logging", "MuladdMacro", "NonlinearSolve", "Parameters", "Printf", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "ZygoteRules"] -git-tree-sha1 = "794496ec71b8f5c14ae8c39d2e908b48540132c0" +deps = ["ArrayInterfaceCore", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "MuladdMacro", "NonlinearSolve", "Parameters", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "Static", "StaticArrays", "Statistics", "Tricks", "ZygoteRules"] +git-tree-sha1 = "3118d179ea4b79054ec5311dc0ce372ffe8b3a3a" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.62.2" +version = "6.100.0" [[DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NLsolve", "OrdinaryDiffEq", "RecipesBase", "RecursiveArrayTools", "StaticArrays"] -git-tree-sha1 = "0972ca167952dc426b5438fc188b846b7a66a1f3" +deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArrays"] +git-tree-sha1 = "f8cc1ad62a87988225a07524ef84c7df7264c232" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.16.1" +version = "2.24.1" [[DiffEqDevTools]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "Statistics"] -git-tree-sha1 = "31756af8adb55554033c42b8ee51a44b668262b9" +git-tree-sha1 = "f4e2df79bd386d4840b96a644cc723e53da03bd1" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.27.2" - -[[DiffEqFinancial]] -deps = ["DiffEqBase", "DiffEqNoiseProcess", "LinearAlgebra", "Markdown", "RandomNumbers"] -git-tree-sha1 = "db08e0def560f204167c58fd0637298e13f58f73" -uuid = "5a0ffddc-d203-54b0-88ba-2c03c0fc2e67" -version = "2.4.0" +version = "2.31.2" [[DiffEqFlux]] -deps = ["Adapt", "ConsoleProgressMonitor", "DataInterpolations", "DiffEqBase", "DiffEqSensitivity", "DiffResults", "Distributions", "DistributionsAD", "Flux", "ForwardDiff", "GalacticOptim", "LinearAlgebra", "Logging", "LoggingExtras", "Printf", "ProgressLogging", "RecursiveArrayTools", "Requires", "StaticArrays", "TerminalLoggers", "Zygote", "ZygoteRules"] -git-tree-sha1 = "b28c10e616d91b5240f22b981d08555cb15917a9" +deps = ["Adapt", "Cassette", "ChainRulesCore", "ConsoleProgressMonitor", "DataInterpolations", "DiffEqBase", "DiffResults", "Distributions", "DistributionsAD", "Flux", "ForwardDiff", "LinearAlgebra", "Logging", "LoggingExtras", "Lux", "NNlib", "Optim", "Optimization", "OptimizationFlux", "OptimizationOptimJL", "OptimizationPolyalgorithms", "Printf", "ProgressLogging", "Random", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLSensitivity", "StaticArrays", "TerminalLoggers", "Zygote", "ZygoteRules"] +git-tree-sha1 = "11d536a7a92e780623c92c36811552e21c89abb7" uuid = "aae7a2af-3d4f-5e19-a356-7da93b79d9d0" -version = "1.37.0" - -[[DiffEqJump]] -deps = ["ArrayInterface", "Compat", "DataStructures", "DiffEqBase", "FunctionWrappers", "LinearAlgebra", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "StaticArrays", "TreeViews", "UnPack"] -git-tree-sha1 = "210ae4148a9b687680c74d13f415cc190fb2c101" -uuid = "c894b116-72e5-5b58-be3c-e6d8d4ac2b12" -version = "6.14.2" +version = "1.52.0" [[DiffEqNoiseProcess]] -deps = ["DiffEqBase", "Distributions", "LinearAlgebra", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "StaticArrays", "Statistics"] -git-tree-sha1 = "817b884e78a4fbabf6aceb54bbd1a733a511f453" +deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArrays", "Statistics"] +git-tree-sha1 = "70590eb0a968cb0a801945c4c26dacca162bbbd3" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.7.3" +version = "5.12.3" + +[[DiffEqOperators]] +deps = ["BandedMatrices", "BlockBandedMatrices", "DiffEqBase", "DomainSets", "ForwardDiff", "LazyArrays", "LazyBandedMatrices", "LinearAlgebra", "LoopVectorization", "NNlib", "NonlinearSolve", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "SuiteSparse"] +git-tree-sha1 = "403d101caee42ba504f2ee74ae6e8413b765605b" +uuid = "9fdde737-9c7f-55bf-ade8-46b3f136cc48" +version = "4.43.1" [[DiffEqPhysics]] deps = ["DiffEqBase", "DiffEqCallbacks", "ForwardDiff", "LinearAlgebra", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "StaticArrays"] @@ -321,10 +464,10 @@ uuid = "055956cb-9e8b-5191-98cc-73ae4a59e68a" version = "3.9.0" [[DiffEqSensitivity]] -deps = ["Adapt", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "FFTW", "FiniteDiff", "ForwardDiff", "GlobalSensitivity", "LinearAlgebra", "Parameters", "QuadGK", "QuasiMonteCarlo", "RecursiveArrayTools", "Reexport", "Requires", "ReverseDiff", "SharedArrays", "Statistics", "StochasticDiffEq", "Tracker", "Zygote", "ZygoteRules"] -git-tree-sha1 = "3f803cdd7cea302faf83f458c5e0e37deb406ded" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceTracker", "Cassette", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffEqOperators", "DiffRules", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "GPUArrays", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "Statistics", "StochasticDiffEq", "Tracker", "Zygote", "ZygoteRules"] +git-tree-sha1 = "87fd2c08bd8749906cdf253a240b21a5c92b7214" uuid = "41bf760c-e81c-5289-8e54-58b1f1f8abe2" -version = "6.45.0" +version = "6.79.0" [[DiffResults]] deps = ["StaticArrays"] @@ -333,133 +476,169 @@ uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" version = "1.0.3" [[DiffRules]] -deps = ["NaNMath", 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"DelimitedFiles", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Printf", "Random", "RelocatableFolders", "Serialization", "Sockets", "Test", "UUIDs"] +git-tree-sha1 = "cf0a9940f250dc3cb6cc6c6821b4bf8a4286cf9c" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.57.4" +version = "0.66.2" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "90acee5c38f4933342fa9a3bbc483119d20e7033" +git-tree-sha1 = "2d908286d120c584abbe7621756c341707096ba4" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.57.2+0" +version = "0.66.2+0" -[[GalacticOptim]] -deps = ["ArrayInterface", "ConsoleProgressMonitor", "DiffEqBase", "DiffResults", "DocStringExtensions", "FiniteDiff", "Flux", "ForwardDiff", "Logging", "LoggingExtras", "ModelingToolkit", "Optim", "Printf", "ProgressLogging", "Reexport", 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deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -568,21 +771,39 @@ version = "0.21.0+0" [[Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "47ce50b742921377301e15005c96e979574e130b" +git-tree-sha1 = "a32d672ac2c967f3deb8a81d828afc739c838a06" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.68.1+0" +version = "2.68.3+2" -[[GlobalSensitivity]] -deps = ["Distributions", "FFTW", "ForwardDiff", "KernelDensity", "LinearAlgebra", "Parameters", "QuasiMonteCarlo", "Random", "RecursiveArrayTools", "Statistics", "StatsBase", "Trapz"] -git-tree-sha1 = "2a0e0d7501b78ab7068ba9cb7cf5ddcb6241782b" -uuid = "af5da776-676b-467e-8baf-acd8249e4f0f" -version = "1.0.0" +[[Graphite2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" +version = "1.3.14+0" + +[[Graphs]] +deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] +git-tree-sha1 = "a6d30bdc378d340912f48abf01281aab68c0dec8" +uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" +version = "1.7.2" [[Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" +[[Groebner]] +deps = ["AbstractAlgebra", "Combinatorics", "Logging", "MultivariatePolynomials", "Primes", "Random"] +git-tree-sha1 = "144cd8158cce5b36614b9c95b8afab6911bd469b" +uuid = "0b43b601-686d-58a3-8a1c-6623616c7cd4" +version = "0.2.10" + +[[GroupsCore]] +deps = ["Markdown", "Random"] +git-tree-sha1 = "9e1a5e9f3b81ad6a5c613d181664a0efc6fe6dd7" +uuid = "d5909c97-4eac-4ecc-a3dc-fdd0858a4120" +version = "0.4.0" + [[HCubature]] deps = ["Combinatorics", "DataStructures", "LinearAlgebra", "QuadGK", "StaticArrays"] git-tree-sha1 = "134af3b940d1ca25b19bc9740948157cee7ff8fa" @@ -590,10 +811,16 @@ uuid = "19dc6840-f33b-545b-b366-655c7e3ffd49" version = "1.5.0" [[HTTP]] -deps = ["Base64", "Dates", "IniFile", "MbedTLS", "NetworkOptions", "Sockets", "URIs"] -git-tree-sha1 = "1fd26bc48f96adcdd8823f7fc300053faf3d7ba1" +deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "59ba44e0aa49b87a8c7a8920ec76f8afe87ed502" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "0.9.9" +version = "1.3.3" + +[[HarfBuzz_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] +git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" +version = "2.8.1+1" [[Highlights]] deps = ["DocStringExtensions", "InteractiveUtils", "REPL"] @@ -601,78 +828,86 @@ git-tree-sha1 = "f823a2d04fb233d52812c8024a6d46d9581904a4" uuid = "eafb193a-b7ab-5a9e-9068-77385905fa72" version = "0.4.5" -[[Hwloc]] -deps = ["Hwloc_jll"] -git-tree-sha1 = "92d99146066c5c6888d5a3abc871e6a214388b91" -uuid = "0e44f5e4-bd66-52a0-8798-143a42290a1d" -version = "2.0.0" +[[HostCPUFeatures]] +deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] +git-tree-sha1 = "b7b88a4716ac33fe31d6556c02fc60017594343c" +uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" +version = "0.1.8" -[[Hwloc_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aac91e34ef4c166e0857e3d6052a3467e5732ceb" -uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.4.1+0" +[[HypergeometricFunctions]] +deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions", "Test"] +git-tree-sha1 = "709d864e3ed6e3545230601f94e11ebc65994641" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.11" [[IJulia]] deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Libdl", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "Test", "UUIDs", "ZMQ"] -git-tree-sha1 = "d8b9c31196e1dd92181cd0f5760ca2d2ffb4ac0f" +git-tree-sha1 = "98ab633acb0fe071b671f6c1785c46cd70bb86bd" uuid = "7073ff75-c697-5162-941a-fcdaad2a7d2a" -version = "1.23.2" - -[[IOCapture]] -deps = ["Logging"] -git-tree-sha1 = "377252859f740c217b936cebcd918a44f9b53b59" -uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" -version = "0.1.1" +version = "1.23.3" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "c67e7515a11f726f44083e74f218d134396d6510" +git-tree-sha1 = "af14a478780ca78d5eb9908b263023096c2b9d64" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.2" +version = "0.4.6" [[IfElse]] -git-tree-sha1 = "28e837ff3e7a6c3cdb252ce49fb412c8eb3caeef" +git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.0" +version = "0.1.1" [[Inflate]] -git-tree-sha1 = "f5fc07d4e706b84f72d54eedcc1c13d92fb0871c" +git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.2" +version = "0.1.3" [[IniFile]] -deps = ["Test"] -git-tree-sha1 = "098e4d2c533924c921f9f9847274f2ad89e018b8" +git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f" -version = "0.5.0" +version = "0.5.1" -[[IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "d979e54b71da82f3a65b62553da4fc3d18c9004c" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2018.0.3+2" +[[InitialValues]] +git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" +uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" +version = "0.3.1" + +[[IntegerMathUtils]] +git-tree-sha1 = "f366daebdfb079fd1fe4e3d560f99a0c892e15bc" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.0" [[InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" -[[Interpolations]] -deps = ["AxisAlgorithms", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "1e0e51692a3a77f1eeb51bf741bdd0439ed210e7" -uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.13.2" +[[IntervalSets]] +deps = ["Dates", "Random", "Statistics"] +git-tree-sha1 = "076bb0da51a8c8d1229936a1af7bdfacd65037e1" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.2" + +[[InverseFunctions]] +deps = ["Test"] +git-tree-sha1 = "b3364212fb5d870f724876ffcd34dd8ec6d98918" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.7" + +[[IrrationalConstants]] +git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" +version = "0.1.1" [[IterTools]] -git-tree-sha1 = "05110a2ab1fc5f932622ffea2a003221f4782c18" +git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.3.0" +version = "1.4.0" [[IterativeSolvers]] deps = ["LinearAlgebra", "Printf", "Random", "RecipesBase", "SparseArrays"] -git-tree-sha1 = "1a8c6237e78b714e901e406c096fc8a65528af7d" +git-tree-sha1 = "1169632f425f79429f245113b775a0e3d121457c" uuid = "42fd0dbc-a981-5370-80f2-aaf504508153" -version = "0.9.1" +version = "0.9.2" [[IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -681,51 +916,81 @@ version = "1.0.0" [[JLLWrappers]] deps = ["Preferences"] -git-tree-sha1 = "642a199af8b68253517b80bd3bfd17eb4e84df6e" +git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.3.0" +version = "1.4.1" [[JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "81690084b6198a2e1da36fcfda16eeca9f9f24e4" +git-tree-sha1 = "3c837543ddb02250ef42f4738347454f95079d4e" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.1" +version = "0.21.3" [[JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9aff0587d9603ea0de2c6f6300d9f9492bbefbd3" +git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.0.1+3" +version = "2.1.2+0" [[JuliaFormatter]] -deps = ["CSTParser", "CommonMark", "DataStructures", "Documenter", "Pkg", "Tokenize"] -git-tree-sha1 = "a030d3617d8ddae0fb26a88f19ec58c2c1350a3d" +deps = ["CSTParser", "CommonMark", "DataStructures", "Pkg", "Tokenize"] +git-tree-sha1 = "bc360182bf55b82cf15efb1cbc1b3607d05e1648" uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899" -version = "0.13.7" +version = "1.0.9" -[[Juno]] -deps = ["Base64", "Logging", "Media", "Profile"] -git-tree-sha1 = "07cb43290a840908a771552911a6274bc6c072c7" -uuid = "e5e0dc1b-0480-54bc-9374-aad01c23163d" -version = "0.8.4" +[[JuliaVariables]] +deps = ["MLStyle", "NameResolution"] +git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" +uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" +version = "0.2.4" -[[KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "591e8dc09ad18386189610acafb970032c519707" -uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.3" +[[JumpProcesses]] +deps = ["ArrayInterfaceCore", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"] +git-tree-sha1 = "5a6e6c522e8a7b39b24be8eebcc13cc7885c6f2c" +uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" +version = "9.2.0" + +[[KLU]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] +git-tree-sha1 = "cae5e3dfd89b209e01bcd65b3a25e74462c67ee0" +uuid = "ef3ab10e-7fda-4108-b977-705223b18434" +version = "0.3.0" + +[[Krylov]] +deps = ["LinearAlgebra", "Printf", "SparseArrays"] +git-tree-sha1 = "a2327039e1c84615e22d662adb3df113caf44b70" +uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" +version = "0.8.3" + +[[KrylovKit]] +deps = ["LinearAlgebra", "Printf"] +git-tree-sha1 = "49b0c1dd5c292870577b8f58c51072bd558febb9" +uuid = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" +version = "0.5.4" [[LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "df381151e871f41ee86cee4f5f6fd598b8a68826" +git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.0+3" +version = "3.100.1+0" + +[[LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" [[LLVM]] -deps = ["CEnum", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "b499c68a45249b0385585c62f4a9b62b5db8e691" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] +git-tree-sha1 = "e7e9184b0bf0158ac4e4aa9daf00041b5909bf1a" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "3.7.1" +version = "4.14.0" + +[[LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] +git-tree-sha1 = "771bfe376249626d3ca12bcd58ba243d3f961576" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.16+0" [[LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -734,21 +999,21 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[LaTeXStrings]] -git-tree-sha1 = "c7f1c695e06c01b95a67f0cd1d34994f3e7db104" +git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.2.1" +version = "1.3.0" [[LabelledArrays]] -deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "StaticArrays"] -git-tree-sha1 = "248a199fa42ec62922225334131c9330e1dd72f6" +deps = ["ArrayInterfaceCore", "ArrayInterfaceStaticArrays", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"] +git-tree-sha1 = "3926535a04c12fb986028a4a86bf5a0a3cf88b91" uuid = "2ee39098-c373-598a-b85f-a56591580800" -version = "1.6.1" +version = "1.12.0" [[Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "Printf", "Requires"] -git-tree-sha1 = "f77a16cb3804f4a74f57e5272a6a4a9a628577cb" +git-tree-sha1 = "1a43be956d433b5d0321197150c2f94e16c0aaa0" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.15.5" +version = "0.15.16" [[LatinHypercubeSampling]] deps = ["Random", "StableRNGs", "StatsBase", "Test"] @@ -762,23 +1027,61 @@ git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" version = "0.0.1" +[[LayoutPointers]] +deps = ["ArrayInterface", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static"] +git-tree-sha1 = "b67e749fb35530979839e7b4b606a97105fe4f1c" +uuid = "10f19ff3-798f-405d-979b-55457f8fc047" +version = "0.1.10" + +[[Lazy]] +deps = ["MacroTools"] +git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" +uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" +version = "0.15.1" + +[[LazyArrays]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays", "StaticArrays"] +git-tree-sha1 = "d9a962fac652cc6b0224622b18199f0ed46d316a" +uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" +version = "0.22.11" + [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +[[LazyBandedMatrices]] +deps = ["ArrayLayouts", "BandedMatrices", "BlockArrays", "BlockBandedMatrices", "FillArrays", "LazyArrays", "LinearAlgebra", "MatrixFactorizations", "SparseArrays", "StaticArrays"] +git-tree-sha1 = "034d371419140f14a986ab7325d11f90f30b0c6d" +uuid = "d7e5e226-e90b-4449-9968-0f923699bf6f" +version = "0.7.17" + +[[LeastSquaresOptim]] +deps = ["FiniteDiff", "ForwardDiff", 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"Logging", "LoggingExtras", "Pkg", "Printf", "ProgressLogging", "Reexport", "Requires", "SciMLBase", "SparseArrays", "TerminalLoggers"] +git-tree-sha1 = "f2dbe632d3aad1fb1e5ee7dbbeb4896aabb39da1" +uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" +version = "3.8.2" + +[[OptimizationFlux]] +deps = ["Flux", "Optimization", "Printf", "ProgressLogging", "Reexport"] +git-tree-sha1 = "a2eb4ec758a38ce82ace42b806d341ac0457b604" +uuid = "253f991c-a7b2-45f8-8852-8b9a9df78a86" +version = "0.1.0" + +[[OptimizationOptimJL]] +deps = ["Optim", "Optimization", "Reexport", "SparseArrays"] +git-tree-sha1 = "76ac41f9e82ba98a600d8a380532adef76b27e15" +uuid = "36348300-93cb-4f02-beb5-3c3902f8871e" +version = "0.1.2" + +[[OptimizationOptimisers]] +deps = ["Optimisers", "Optimization", "Printf", "ProgressLogging", "Reexport"] +git-tree-sha1 = "e2f152fc4adc9a634ca6ec00de2f2500d8642789" +uuid = "42dfb2eb-d2b4-4451-abcd-913932933ac1" +version = "0.1.0" + +[[OptimizationPolyalgorithms]] +deps = ["Optimization", "OptimizationOptimJL", "OptimizationOptimisers"] +git-tree-sha1 = "b4a77f60effaa6d3ce7de3c1d5635ba242acfa6f" +uuid = "500b13db-7e66-49ce-bda4-eed966be6282" +version = "0.1.0" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f9d57f4126c39565e05a2b0264df99f497fc6f37" +git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.1+3" +version = "1.3.2+0" [[OrderedCollections]] git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c" @@ -1050,10 +1446,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.4.1" [[OrdinaryDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "NLsolve", "Polyester", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "41876bb349abcea2448e15af863a0eaba74759a7" +deps = ["Adapt", "ArrayInterface", "ArrayInterfaceGPUArrays", "ArrayInterfaceStaticArrays", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "fce6fcee6b69bbeb9b6652b2b00adc7fbf9984bc" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "5.56.0" +version = "6.26.2" [[PCRE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1063,27 +1459,21 @@ version = "8.44.0+0" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f82a0e71f222199de8e9eb9a09977bd0767d52a0" +git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.0" - -[[ParameterizedFunctions]] -deps = ["DataStructures", "DiffEqBase", "DocStringExtensions", "Latexify", "LinearAlgebra", "ModelingToolkit", "Reexport", "SciMLBase"] -git-tree-sha1 = "d290c172dae21d73ae6a19a8381abbb69ef0a624" -uuid = "65888b18-ceab-5e60-b2b9-181511a3b968" -version = "5.10.0" +version = "0.11.16" [[Parameters]] deps = ["OrderedCollections", "UnPack"] -git-tree-sha1 = "2276ac65f1e236e0a6ea70baff3f62ad4c625345" +git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" -version = "0.12.2" +version = "0.12.3" [[Parsers]] deps = ["Dates"] -git-tree-sha1 = "c8abc88faa3f7a3950832ac5d6e690881590d6dc" +git-tree-sha1 = "3d5bf43e3e8b412656404ed9466f1dcbf7c50269" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "1.1.0" +version = "2.4.0" [[Pixman_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1094,36 +1484,43 @@ version = "0.40.1+0" [[Pkg]] deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.8.0" [[PlotThemes]] -deps = ["PlotUtils", "Requires", "Statistics"] -git-tree-sha1 = "a3a964ce9dc7898193536002a6dd892b1b5a6f1d" +deps = ["PlotUtils", "Statistics"] +git-tree-sha1 = "8162b2f8547bc23876edd0c5181b27702ae58dce" uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "2.0.1" +version = "3.0.0" [[PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "ae9a295ac761f64d8c2ec7f9f24d21eb4ffba34d" +git-tree-sha1 = "9888e59493658e476d3073f1ce24348bdc086660" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.0.10" +version = "1.3.0" [[Plots]] -deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "JSON", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"] -git-tree-sha1 = "f3a57a5acc16a69c03539b3684354cbbbb72c9ad" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] +git-tree-sha1 = "3f9b0706d6051d8edf9959e2422666703080722a" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.15.2" +version = "1.32.0" [[PoissonRandom]] -deps = ["Random", "Statistics", "Test"] -git-tree-sha1 = "44d018211a56626288b5d3f8c6497d28c26dc850" +deps = ["Random"] +git-tree-sha1 = "9ac1bb7c15c39620685a3a7babc0651f5c64c35b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" -version = "0.4.0" +version = "0.4.1" [[Polyester]] -deps = ["ArrayInterface", "IfElse", "Requires", "Static", "StrideArraysCore", "ThreadingUtilities", "VectorizationBase"] -git-tree-sha1 = "04a03d3f8ae906f4196b9085ed51506c4b466340" +deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StrideArraysCore", "ThreadingUtilities"] +git-tree-sha1 = "6ee5518f7baa05e154757a003bfb6936a174dbad" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.3.1" +version = "0.6.15" + +[[PolyesterWeave]] +deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] +git-tree-sha1 = "233feae14c07cca6b95080f77a7d332612603f6a" +uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" +version = "0.1.9" [[PositiveFactorizations]] deps = ["LinearAlgebra"] @@ -1131,20 +1528,33 @@ git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" +[[PreallocationTools]] +deps = ["Adapt", "ArrayInterfaceCore", "ForwardDiff", "ReverseDiff"] +git-tree-sha1 = "5c076a409ec8d2a86d3685a7e4fed330cd489889" +uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" +version = "0.4.2" + [[Preferences]] deps = ["TOML"] -git-tree-sha1 = "00cfd92944ca9c760982747e9a1d0d5d86ab1e5a" +git-tree-sha1 = "47e5f437cc0e7ef2ce8406ce1e7e24d44915f88d" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.2.2" +version = "1.3.0" + +[[PrettyPrint]] +git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" +uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" +version = "0.2.0" + +[[Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "311a2aa90a64076ea0fac2ad7492e914e6feeb81" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.3" [[Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" -[[Profile]] -deps = ["Printf"] -uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" - [[ProgressLogging]] deps = ["Logging", "SHA", "UUIDs"] git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" @@ -1153,47 +1563,53 @@ version = "0.1.4" [[ProgressMeter]] deps = ["Distributed", "Printf"] -git-tree-sha1 = "1be8800271c86f572d334fef6e3b8364eaece7d9" +git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.6.2" +version = "1.7.2" [[Qt5Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"] -git-tree-sha1 = "16626cfabbf7206d60d84f2bf4725af7b37d4a77" +git-tree-sha1 = "c6c0f690d0cc7caddb74cef7aa847b824a16b256" uuid = "ea2cea3b-5b76-57ae-a6ef-0a8af62496e1" -version = "5.15.2+0" 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"Sundials_jll"] +git-tree-sha1 = "5717b2c13ddc167d7db931bfdd1a94133ee1d4f0" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.4.3" +version = "4.10.1" [[Sundials_jll]] -deps = ["CompilerSupportLibraries_jll", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] -git-tree-sha1 = "013ff4504fc1d475aa80c63b455b6b3a58767db2" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] +git-tree-sha1 = "04777432d74ec5bc91ca047c9e0e0fd7f81acdb6" uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" -version = "5.2.0+1" +version = "5.2.1+0" [[SymbolicUtils]] -deps = ["AbstractAlgebra", "AbstractTrees", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "IfElse", "LabelledArrays", "LinearAlgebra", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "TimerOutputs"] -git-tree-sha1 = "e024f71ab5d34fcb7e27740c304b65a64264f48f" +deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "Metatheory", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "TermInterface", "TimerOutputs"] +git-tree-sha1 = "027b43d312f6d52187bb16c2d4f0588ddb8c4bb2" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "0.11.2" +version = "0.19.11" [[Symbolics]] -deps = ["AbstractAlgebra", "DiffRules", "Distributions", "DocStringExtensions", "IfElse", "Latexify", "Libdl", "LinearAlgebra", "MacroTools", "NaNMath", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "SymbolicUtils", "TreeViews"] -git-tree-sha1 = "dbf9d244c7b399049b6a5b53771c0c149a8ab0b2" +deps = ["ArrayInterfaceCore", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "Groebner", "IfElse", "Latexify", "Libdl", "LinearAlgebra", "MacroTools", "Markdown", "Metatheory", "NaNMath", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicUtils", "TermInterface", "TreeViews"] +git-tree-sha1 = "873596ee5c98f913bcb2cbb2dc779d815c5aeb86" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "0.1.25" +version = "4.10.4" [[TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.0" [[TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -1483,58 +1971,77 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"] -git-tree-sha1 = "c9d2d262e9a327be1f35844df25fe4561d258dc9" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] +git-tree-sha1 = 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[[ThreadingUtilities]] -deps = ["VectorizationBase"] -git-tree-sha1 = "28f4295cd761ce98db2b5f8c1fe6e5c89561efbe" +deps = ["ManualMemory"] +git-tree-sha1 = "f8629df51cab659d70d2e5618a430b4d3f37f2c3" uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.4.4" +version = "0.5.0" + +[[ThreadsX]] +deps = ["ArgCheck", "BangBang", "ConstructionBase", "InitialValues", "MicroCollections", "Referenceables", "Setfield", "SplittablesBase", "Transducers"] +git-tree-sha1 = "d223de97c948636a4f34d1f84d92fd7602dc555b" +uuid = "ac1d9e8a-700a-412c-b207-f0111f4b6c0d" +version = "0.1.10" [[TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "bf8aacc899a1bd16522d0350e1e2310510d77236" +git-tree-sha1 = "9dfcb767e17b0849d6aaf85997c98a5aea292513" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.9" +version = "0.5.21" [[Tokenize]] -git-tree-sha1 = "15318136d8b7a91a0e49916ec931cc51d5456ab2" +git-tree-sha1 = "2b3af135d85d7e70b863540160208fa612e736b9" uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624" -version = "0.5.16" +version = "0.5.24" [[Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "LinearAlgebra", "MacroTools", "NNlib", "NaNMath", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "bf4adf36062afc921f251af4db58f06235504eff" +deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "2006952bef6c330fcec7605f27281e9d45d0743a" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.16" +version = "0.2.21" [[TranscodingStreams]] deps = ["Random", "Test"] -git-tree-sha1 = "7c53c35547de1c5b9d46a4797cf6d8253807108c" +git-tree-sha1 = "8a75929dcd3c38611db2f8d08546decb514fcadf" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.5" +version = "0.9.9" -[[Trapz]] -git-tree-sha1 = "aff96deaaa38e3b52a5af1dd3da376d49bf6ec9a" -uuid = "592b5752-818d-11e9-1e9a-2b8ca4a44cd1" -version = "2.0.2" +[[Transducers]] +deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] +git-tree-sha1 = "c76399a3bbe6f5a88faa33c8f8a65aa631d95013" +uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" +version = "0.4.73" [[TreeViews]] deps = ["Test"] @@ -1542,10 +2049,21 @@ git-tree-sha1 = "8d0d7a3fe2f30d6a7f833a5f19f7c7a5b396eae6" uuid = "a2a6695c-b41b-5b7d-aed9-dbfdeacea5d7" version = "0.3.0" +[[TriangularSolve]] +deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "SnoopPrecompile", "Static", "VectorizationBase"] +git-tree-sha1 = "8987cf4a0f8d6c375e4ab1438a048e0a185151e4" +uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" +version = "0.1.13" + +[[Tricks]] +git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.6" + [[URIs]] -git-tree-sha1 = "97bbe755a53fe859669cd907f2d96aee8d2c1355" +git-tree-sha1 = "e59ecc5a41b000fa94423a578d29290c7266fc10" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.3.0" +version = "1.4.0" [[UUIDs]] deps = ["Random", "SHA"] @@ -1556,61 +2074,71 @@ git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" version = "1.0.2" +[[Underscores]] +git-tree-sha1 = "6e6de5a5e7116dcff8effc99f6f55230c61f6862" +uuid = "d9a01c3f-67ce-4d8c-9b55-35f6e4050bb1" +version = "3.0.0" + [[Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +[[UnicodeFun]] +deps = ["REPL"] +git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" +uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" +version = "0.4.1" + [[Unitful]] deps = ["ConstructionBase", "Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "c6bbc170505c5ea36593a0072b61d3be8bf868ae" +git-tree-sha1 = "b649200e887a487468b71821e2644382699f1b0f" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.7.0" +version = "1.11.0" + +[[Unzip]] +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" +uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" +version = "0.2.0" [[VectorizationBase]] -deps = ["ArrayInterface", "Hwloc", "IfElse", "Libdl", "LinearAlgebra", "Static"] -git-tree-sha1 = "85016abd56ce0a14d5d4995fadc97b9345911aae" +deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"] +git-tree-sha1 = "05be19531ae910fb482db2d4c45e1aa1cde50560" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.20.11" +version = "0.21.47" [[VersionParsing]] -git-tree-sha1 = "80229be1f670524750d905f8fc8148e5a8c4537f" +git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" uuid = "81def892-9a0e-5fdd-b105-ffc91e053289" -version = "1.2.0" +version = "1.3.0" [[VertexSafeGraphs]] -deps = ["LightGraphs"] -git-tree-sha1 = "b9b450c99a3ca1cc1c6836f560d8d887bcbe356e" +deps = ["Graphs"] +git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" -version = "0.1.2" +version = "0.2.0" [[Wayland_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "dc643a9b774da1c2781413fd7b6dcd2c56bb8056" +git-tree-sha1 = "3e61f0b86f90dacb0bc0e73a0c5a83f6a8636e23" uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.17.0+4" +version = "1.19.0+0" [[Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll"] -git-tree-sha1 = "2839f1c1296940218e35df0bbb220f2a79686670" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.18.0+4" +version = "1.25.0+0" [[Weave]] deps = ["Base64", "Dates", "Highlights", "JSON", "Markdown", "Mustache", "Pkg", "Printf", "REPL", "Requires", "Serialization", "YAML"] -git-tree-sha1 = "4afd286cd80d1c2c338f9a13356298feac7348d0" +git-tree-sha1 = "3095e0708dc274e3ce10fca14327d8d7e8de3d30" uuid = "44d3d7a6-8a23-5bf8-98c5-b353f8df5ec9" -version = "0.10.8" - -[[WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "59e2ad8fd1591ea019a5259bd012d7aee15f995c" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.3" +version = "0.10.9" [[XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "1acf5bdf07aa0907e0a37d3718bb88d4b687b74a" +git-tree-sha1 = "58443b63fb7e465a8a7210828c91c08b92132dff" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.9.12+0" +version = "2.9.14+0" [[XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1745,10 +2273,10 @@ uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" version = "1.4.0+3" [[YAML]] -deps = ["Base64", "Dates", "Printf"] -git-tree-sha1 = "78c02bd295bbd0ca330f95e07ccdfcb69f6cbcd4" +deps = ["Base64", "Dates", "Printf", "StringEncodings"] +git-tree-sha1 = "3c6e8b9f5cdaaa21340f841653942e1a6b6561e5" uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.6" +version = "0.4.7" [[ZMQ]] deps = ["FileWatching", "Sockets", "ZeroMQ_jll"] @@ -1758,49 +2286,55 @@ version = "1.2.1" [[ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "libsodium_jll"] -git-tree-sha1 = "74a74a3896b63980734cc876da8a103454559fe8" +git-tree-sha1 = "fe5c65a526f066fb3000da137d5785d9649a8a47" uuid = "8f1865be-045e-5c20-9c9f-bfbfb0764568" -version = "4.3.2+6" - -[[ZipFile]] -deps = ["Libdl", "Printf", "Zlib_jll"] -git-tree-sha1 = "c3a5637e27e914a7a445b8d0ad063d701931e9f7" -uuid = "a5390f91-8eb1-5f08-bee0-b1d1ffed6cea" -version = "0.9.3" +version = "4.3.4+0" [[Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.12+3" [[Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "cc4bf3fdde8b7e3e9fa0351bdeedba1cf3b7f6e6" +git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.0+0" +version = "1.5.2+0" [[Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "MacroTools", "NaNMath", "Random", "Requires", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "c8b2ac496fd1154fa9020af827f10cced736e8c5" +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "c3f4af6b167f0c181148650221a4cbabf6bbb8a6" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.11" +version = "0.6.47" [[ZygoteRules]] deps = ["MacroTools"] -git-tree-sha1 = "9e7a1e8ca60b742e508a315c17eef5211e7fbfd7" +git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.1" +version = "0.2.2" + +[[libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" +version = "3.4.0+0" [[libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "acc685bcf777b2202a904cdcb49ad34c2fa1880c" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.14.0+4" +version = "0.15.1+0" + +[[libblastrampoline_jll]] +deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.1.1+0" [[libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7a5780a0d9c6864184b3a2eeeb833a0c871f00ab" +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "0.1.6+4" +version = "2.0.2+0" [[libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -1816,32 +2350,34 @@ version = "1.0.20+0" [[libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "fa14ac25af7a4b8a7f61b287a124df7aab601bcd" +git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.6+6" +version = "1.3.7+1" [[nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.48.0+0" [[p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+0" [[x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "d713c1ce4deac133e3334ee12f4adff07f81778f" +git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2020.7.14+2" +version = "2021.5.5+0" [[x265_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "487da2f8f2f0c8ee0e83f39d13037d6bbf0a45ab" +git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.0.0+3" +version = "3.5.0+0" [[xkbcommon_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "ece2350174195bb31de1a63bea3a41ae1aa593b6" +git-tree-sha1 = "9ebfc140cc56e8c2156a15ceac2f0302e327ac0a" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "0.9.1+5" +version = "1.4.1+0" diff --git a/tutorials/models/Project.toml b/tutorials/models/Project.toml index 9d2ffc35..30894f31 100644 --- a/tutorials/models/Project.toml +++ b/tutorials/models/Project.toml @@ -21,7 +21,7 @@ SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StochasticDiffEq = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" [compat] -Catalyst = "5, 6.0, 7, 8, 9" +Catalyst = "5, 6.0, 7, 8, 9, 10, 11, 12" DiffEqCallbacks = "2.13" DiffEqDevTools = "2.22" DiffEqPhysics = "3.5" @@ -34,7 +34,7 @@ ModelingToolkit = "3.10, 4.0, 5.0, 6, 7, 8" NLsolve = "4.4" NeuralPDE = "2, 3.0, 4" Optim = "0.21, 0.22, 1.0" -OrdinaryDiffEq = "5.41" +OrdinaryDiffEq = "5.41, 6" Plots = "1.4" RecursiveArrayTools = "2.5" SciMLTutorials = "0.9, 1"