This app runs BLAST locally then parses and displays the results. It can be directly integrated into existing apps or function as a standalone blast server.
A Blog post describing the code can be found here
- Unix like environment
- Current BLAST executables
- The following R packages
- shinythemes (optional)
In the ui.r file, change line 4
custom_db <- c("LvTx") to include the name of your databases.
Note that in the current configuration when nr is selected a 'remote' BLAST is called so this database does not need to be stored locally.
In the server.r file, change lines 8 and 9 to add your own database names and paths (they must match the names in the ui.r files). Be sure that you include the path to the databases like so:
custom_db <- c("YOUR_DATABASE NAME") custom_db_path <- c("/PATH_TO_YOUR_DATABSE)