diff --git a/content/english/biobanks/_index.md b/content/english/biobanks/_index.md index 1dca11d1..5cb630d5 100644 --- a/content/english/biobanks/_index.md +++ b/content/english/biobanks/_index.md @@ -20,7 +20,7 @@ As of September 2021, the Sample Collection Database contains information about ### Submit information about sample collections -Those wishing to submit information about their sample collections to the database should [contact Biobank Sverige](https://biobanksverige.se/provsamlingar-publicerade-i-covid-19-data-portal-sweden-underlattar-forskning-om-covid-19/) (the linked page also contains forms for adding new collections to the database). Questions, comments, or suggestions regarding the database itself can be sent to datacentre@scilifelab.se. +Those wishing to submit information about their sample collections to the database should [contact Biobank Sverige](https://biobanksverige.se/provsamlingar-publicerade-i-covid-19-data-portal-sweden-underlattar-forskning-om-covid-19/) (the linked page also contains forms for adding new collections to the database). Questions, comments, or suggestions regarding the database itself can be sent to . ### Responsible organisations diff --git a/content/english/biobanks/add_biobank.md b/content/english/biobanks/add_biobank.md index a9100630..8350968d 100644 --- a/content/english/biobanks/add_biobank.md +++ b/content/english/biobanks/add_biobank.md @@ -15,4 +15,4 @@ The personal data you provide in this form, your name, email address and phone n The information you provide will be processed for research purposes, i.e. using the lawful basis of public interest and following the Regulation (EU) 2016/679 of the European Parliament and of the Council of 27 April 2016 (General Data Protection Regulation) on the protection of natural persons about the processing of personal data and on the free movement of such data. -The following parties will have access to processing your personal data: SciLifeLab Data Centre, Uppsala University and Biobank Sverige, Region Uppsala. Your personal data will be deleted when no longer needed, or when stipulated by the archival rules for the university as a government authority. If you want to update or remove your personal data please contact the controller SciLifeLab Data Centre at Uppsala University using datacentre@scilifelab.se. +The following parties will have access to processing your personal data: SciLifeLab Data Centre, Uppsala University and Biobank Sverige, Region Uppsala. Your personal data will be deleted when no longer needed, or when stipulated by the archival rules for the university as a government authority. If you want to update or remove your personal data please contact the controller SciLifeLab Data Centre at Uppsala University using . diff --git a/content/english/biobanks/add_collection.md b/content/english/biobanks/add_collection.md index 3ed2c340..0c1d34a6 100644 --- a/content/english/biobanks/add_collection.md +++ b/content/english/biobanks/add_collection.md @@ -15,4 +15,4 @@ The personal data you provide in this form, your name, email address and phone n The information you provide will be processed for research purposes, i.e. using the lawful basis of public interest and following the Regulation (EU) 2016/679 of the European Parliament and of the Council of 27 April 2016 (General Data Protection Regulation) on the protection of natural persons about the processing of personal data and on the free movement of such data. -The following parties will have access to processing your personal data: SciLifeLab Data Centre, Uppsala University and Biobank Sverige, Region Uppsala. Your personal data will be deleted when no longer needed, or when stipulated by the archival rules for the university as a government authority. If you want to update or remove your personal data please contact the controller SciLifeLab Data Centre at Uppsala University using datacentre@scilifelab.se. +The following parties will have access to processing your personal data: SciLifeLab Data Centre, Uppsala University and Biobank Sverige, Region Uppsala. Your personal data will be deleted when no longer needed, or when stipulated by the archival rules for the university as a government authority. If you want to update or remove your personal data please contact the controller SciLifeLab Data Centre at Uppsala University using . diff --git a/content/english/dashboards/wastewater/covid_quant_GU.md b/content/english/dashboards/wastewater/covid_quant_GU.md index 683a5811..40773ed2 100644 --- a/content/english/dashboards/wastewater/covid_quant_GU.md +++ b/content/english/dashboards/wastewater/covid_quant_GU.md @@ -69,7 +69,7 @@ Influent wastewater samples were collected from Ryaverket wastewater treatment p ## Dataset **Download the data:** [Quantification of SARS-CoV-2 and enteric viruses in wastewater](https://blobserver.dckube.scilifelab.se/blob/wastewater_data_gu_allviruses.xlsx). Results are available for SARS-CoV-2 from week 7 of 2020 (with a small gap over winter 2022-2023), and for enteric viruses from week 2 of 2023. Updated weekly.\ -**Contact:** helene.norder@gu.se +**Contact:** **How to cite the dataset:** Norder, H., Nyström, K. Patzi Churqui, M., Tunovic, T., Wang, H. (2023). Detection of SARS-CoV-2 and other human enteric viruses in wastewater from Gothenburg. [https://doi.org/10.17044/scilifelab.22510501](https://doi.org/10.17044/scilifelab.22510501). diff --git a/content/english/dashboards/wastewater/covid_quant_KTH.md b/content/english/dashboards/wastewater/covid_quant_KTH.md index 8ae90429..bea69c63 100644 --- a/content/english/dashboards/wastewater/covid_quant_KTH.md +++ b/content/english/dashboards/wastewater/covid_quant_KTH.md @@ -90,7 +90,7 @@ Please also note that although the same methods are used for all cities shown on ## Dataset **Download the data:** [N3-gene copy number per PMMoV gene copy number; Excel file](https://blobserver.dckube.scilifelab.se/blob/stockholm_wastewater_method_Sep_2021.xlsx). Results are available (partially) starting from week 16 of 2020 for Stockholm and starting from week 39 of 2021 for Malmö; updated weekly.\ -**Contact:** zeynepcg@kth.se +**Contact:** **How to cite dataset:** Cetecioglu, Z. G., Williams, C., Khatami, K., Atasoy, M., Nandy, P., Jafferali, M. H., Birgersson, M. (2021). SARS-CoV-2 Wastewater Data from Stockholm, Sweden. [https://doi.org/10.17044/scilifelab.14315483](https://doi.org/10.17044/scilifelab.14315483). diff --git a/content/english/dashboards/wastewater/covid_quant_SLU.md b/content/english/dashboards/wastewater/covid_quant_SLU.md index f4a629e0..fce2714d 100644 --- a/content/english/dashboards/wastewater/covid_quant_SLU.md +++ b/content/english/dashboards/wastewater/covid_quant_SLU.md @@ -111,7 +111,7 @@ The group provide reports to summarise their latest findings. The latest report ## Dataset -**Contact:** anna.szekely@slu.se and maja.malmberg@slu.se +**Contact:** and **Download the data:** [N1-gene copy number per PMMoV gene copy number, CSV file.](https://datagraphics.dckube.scilifelab.se/dataset/0ac8fa02871745048491de74e5689da9.csv). Data are available from week 38 of 2020; updated weekly. diff --git a/content/english/dashboards/wastewater/historic_orebro_umea.md b/content/english/dashboards/wastewater/historic_orebro_umea.md index 538a7f46..12ece8f0 100644 --- a/content/english/dashboards/wastewater/historic_orebro_umea.md +++ b/content/english/dashboards/wastewater/historic_orebro_umea.md @@ -7,7 +7,7 @@ aliases: This page displays data on the amount of SARS-CoV-2 in Umeå and Örebro wastewater between October 2020 and June 2021. After June 2021, a new method is used for analyses of wastewater, and [the most recent data can be found here](../). -The data displayed here were collected as part of a research project led by associate professor Maja Malmberg (SLU, Swedish University of Agricultural Sciences; maja.malmberg@slu.se) in collaboration with the [SciLifeLab COVID-19 National Research Program](https://www.scilifelab.se/covid-19) and associate professor Mette Myrmel at the Norwegian University of Life Sciences. The amount of SARS-CoV-2 virus in the wastewater of Umeå is measured using samples taken from the wastewater treatment facilities in Umeå and Örebro. Please [consult this map for the exact catchment area of the wastewater collection channels in Umeå](/wastewater/map_umeaa.jpg). Please [consult this map for the exact catchment area of the wastewater collection channels in Örebro](/wastewater/map_orebro.pdf). +The data displayed here were collected as part of a research project led by associate professor Maja Malmberg (SLU, Swedish University of Agricultural Sciences; ) in collaboration with the [SciLifeLab COVID-19 National Research Program](https://www.scilifelab.se/covid-19) and associate professor Mette Myrmel at the Norwegian University of Life Sciences. The amount of SARS-CoV-2 virus in the wastewater of Umeå is measured using samples taken from the wastewater treatment facilities in Umeå and Örebro. Please [consult this map for the exact catchment area of the wastewater collection channels in Umeå](/wastewater/map_umeaa.jpg). Please [consult this map for the exact catchment area of the wastewater collection channels in Örebro](/wastewater/map_orebro.pdf). After preparation, the viruses were extracted using ultra filtration and analyzed using qPCR technique for SARS CoV-2 RNA. Primers were used to detect the SARS-COV-2 gene (previously used and verified by [Corman and colleagues (2020)](https://doi.org/10.2807/1560-7917.ES.2020.25.3.2000045)). qPCR samples were normalized against PMMV. Until January 2021, three samples per week were taken and their results were pooled to provide a weekly estimate. From February 2021, samples were instead collected weekly. diff --git a/content/english/dashboards/wastewater/historic_stockholm.md b/content/english/dashboards/wastewater/historic_stockholm.md index 717ed089..0f7573c6 100644 --- a/content/english/dashboards/wastewater/historic_stockholm.md +++ b/content/english/dashboards/wastewater/historic_stockholm.md @@ -7,7 +7,7 @@ aliases: This page displays data on the amount of SARS-CoV-2 in Stockholm between April 2020 and August 2021 calculated as Gene copy number/week (raw wastewater) with bovine + PMMoV factor. From September 2021 onwards, the method was changed. Please [see this page for the most recent data](./). -This project, led by associate professor Zeynep Cetecioglu Gurol and colleagues (KTH Royal Institute of Technology; zeynepcg@kth.se), is a collaboration between the [SciLifeLab COVID-19 National Research Program](https://www.scilifelab.se/covid-19) and the [SEED](https://www.kth.se/en/seed) and [Chemical Engineering](https://www.kth.se/ket/chemical-engineering-1.784196) departments at KTH, in close collaboration with Stockholm Vatten och Avfall and the Käppala Association. The sampling of wastewater, started in mid-April 2020, from Bromma, Henriksdal, and Käppala wastewater treatment plants (WWTP). These treatment plants receive wastewater from a population of approximately 360,000; 860,000 and 500,000, respectively. Please consult [this map for the exact catchment area of the wastewater collection channels in Käppala](/wastewater/map_Kappala.pdf) and [this map for the exact catchment area of the wastewater collection channels in Bromma and Henriksdal](/wastewater/map_Bromma_Henriksdal.pdf). +This project, led by associate professor Zeynep Cetecioglu Gurol and colleagues (KTH Royal Institute of Technology; ), is a collaboration between the [SciLifeLab COVID-19 National Research Program](https://www.scilifelab.se/covid-19) and the [SEED](https://www.kth.se/en/seed) and [Chemical Engineering](https://www.kth.se/ket/chemical-engineering-1.784196) departments at KTH, in close collaboration with Stockholm Vatten och Avfall and the Käppala Association. The sampling of wastewater, started in mid-April 2020, from Bromma, Henriksdal, and Käppala wastewater treatment plants (WWTP). These treatment plants receive wastewater from a population of approximately 360,000; 860,000 and 500,000, respectively. Please consult [this map for the exact catchment area of the wastewater collection channels in Käppala](/wastewater/map_Kappala.pdf) and [this map for the exact catchment area of the wastewater collection channels in Bromma and Henriksdal](/wastewater/map_Bromma_Henriksdal.pdf). After concentration, filtering, and preparation, the samples are analyzed using qPCR technique for SARS CoV-2 RNA. Primers of the nucleocapsid (N) gene were used to detect the SARS-COV-2 gene (previously used and verified by [Medema and colleagues (2020)](https://doi.org/10.1016/j.scitotenv.2020.142939)). In some cases, the raw wastewater has been frozen at –20 degrees, and concentrated wastewater or purified RNA have been stored at -80 C before the next analysis step was carried out. The concentration method used by prof. Zeynep Cetecioglu Gurol and her colleagues is based on their published study ([Jafferali and colleagues, 2021](https://doi.org/10.1016/j.scitotenv.2020.142939)) comparing four different concentration methods. The study concluded that the double ultrafiltration method adapted by KTH has a significantly higher efficiency compared to single filtration and adsorption methods. For detailed information about the concentration method, see the publication. diff --git a/content/english/highlights/igh_antibody_genes.md b/content/english/highlights/igh_antibody_genes.md new file mode 100644 index 00000000..e510be5b --- /dev/null +++ b/content/english/highlights/igh_antibody_genes.md @@ -0,0 +1,47 @@ +--- +title: Variability in IGH antibody genes influences the response to SARS-CoV-2 +date: 2023-05-05 +summary: Pushparaj and colleagues use genotyping and haplotype analysis to show high genetic diversity in IGH genes among humans, which may influence our response to infections. Data, and IgDiscover software shared. +banner: /highlights/banners/igh_antibody_genes_small.jpg +banner_large: /highlights/banners/igh_antibody_genes.jpg +banner_caption: Graphical abstract (Image courtesy Pushparaj et al. 2023) +highlights_topics: [COVID-19, Infectious Diseases] +announcement: "This data highlight was also [published on the SciLifeLab Data Platform](https://data.scilifelab.se/highlights/igh_antibody_genes/), as the work described in this highlight constitutes data-driven life science. The Platform is a hub for data-driven life science in Sweden, containing multiple relevant resources, tools, and services. It includes information on multiple subjects, including infectious diseases, please check out the [Data Platform](https://data.scilifelab.se/) for more." +--- + +The COVID-19 pandemic has highlighted the importance of research focused on our ability to control infections and to explore why certain individuals respond differently than others to disease and vaccination. Recent COVID-19 research has contributed valuable information about how immune-related genes influence the ability to control SARS-CoV-2 infection. While some genes are connected with increased risk of serious infection, e.g. inborn deficiencies in type I interferon, other genes may confer protective effects against the development of severe COVID-19 disease, e.g. archaic-derived isoform of oligoadenylate synthetase (OAS), which is an interferon-induced effector molecule. These studies focused on explaining how variations in our innate immune system influence our control of SARS-CoV-2. So far, much less is known about how genetic variations underpinning our adaptive immune responses influence how we react to viral infections and our ability to form immunological memory to viruses such as SARS-CoV-2. + +New studies show that immunoglobulin heavy chain (IGH) genes, specifically IGHV1-69, is used by many S-specific SARS-CoV-2 neutralizing antibodies. The IGHV1-69 gene is known for being both highly polymorphic and subject to copy number variation, features that shape different person’s naïve B cell repertoires. As such, it is likely that this variation has implications for the human response to infection, and vaccination. + +In a recently published article in _Immunity_, researchers from Karolinska Institutet (_First author:_ Pradeepa Pushparaj, _Corresponding author:_ Gunilla B Karlsson Hedestam) studied the role of IGH germline gene variation in antibody response against SARS-CoV-2. They isolated SARS-CoV-2 spike-specific monoclonal antibodies from a previously collected cohort of convalescent healthcare workers (N=14, seropositive for S-IgG) and selected a set of potently neutralizing IGHV1-69-using antibodies. They used the IG genotyping tool IgDiscover (learn more about the software here) and inferred haplotype analysis to study the variation in IGHV allele composition between the study participants. While one participant was homozygous for IGHV1-69∗01, nine had two or three different alleles of this gene and two were found to have four different IGHV1-69 alleles. Six different alleles, e.g. IGHV1-69∗20, were found among the participants. + +The team focused on an individual who had three IGHV1-69 alleles from whom they cloned the IGHV1-69∗20-using CAB-I47 antibody, and two highly similar antibodies that were isolated from an independent donor. They then engineered the three IGHV1-69∗20-using mAbs to assess if germline-encoded polymorphisms that characterize the IGHV1-69*20 allele were required for the neutralization activity of the antibodies. They found this to be the case. By using cryo-EM to analyze structural data, they found that the CAB-I47 Fab, in complex with the SARS-CoV-2 spike, docked into the receptor-binding domain (RBD) of the virus, with two germline-encoded polymorphisms in IGHV1-69, R50 and F55, being required for the high affinity RBD interaction. They also confirmed this finding experimentally. + +>Gunilla B. Karlsson Hedestam, the corresponding author says "Antibody genetics is a notoriously complex field. Thanks to new experimental methods and our computational tool, IgDiscover, we can now resolve the fine details of antibody genes. These studies reveal a surprising level of genetic variability among humans, which influence how we respond to infections". + +In summary, this study showed that human IGH antibody genes are highly variable and germline-encoded residues specific to given IGHV1-69 alleles can shape the neutralizing antibody response to SARS-CoV-2. These results demonstrate that genetic differences can influence our antibody response to SARS-CoV-2 and thus also shape long-lived memory B cell responses induced by infection or vaccination. + +#### Data + +Adhering to Open Science and FAIR the researchers have shared sequence data in GenBanka and data in several repositories such as ProteomeXchange, PDB, EMD and SciLifeLab Data Repository. + +* HC (VDJ) and LC (VJ) sequences of neutralizing mAbs available in GenBank ([OP497961 - OP497964](https://www.ncbi.nlm.nih.gov/nuccore/?term=OP497961%3AOP497964%5Bpacc%5D) and [ON086918 - ON086947](https://www.ncbi.nlm.nih.gov/nuccore/?term=ON086918%3AON086947%5Bpacc%5D)). +* The repertoire sequence data is available in [Figshare](http://doi.org/10.17044/scilifelab.19317512) hosted by SciLifeLab. +* Cryo-EM structures of CAB-I47 Fabs in complex with the spike trimer are deposited Protein Data Bank ([8A99](https://www.rcsb.org/structure/unreleased/8A99), [8A94](https://www.rcsb.org/structure/8A94), and [8A96](https://www.rcsb.org/structure/8A96)) and Electron Microscopy Data Bank ([EMD-15273](https://www.ebi.ac.uk/emdb/EMD-15273), [EMD-15269](https://www.ebi.ac.uk/emdb/EMD-15269), and [EMD-15271](https://www.ebi.ac.uk/emdb/EMD-15271)). +* Mass spectrometry raw files and HDX analysis, deposited on ProteomeXchange Consortium via PRIDE. Can be accessed by [PXD031945](https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD031945). +* The IgDiscover software can be found [here](http://docs.igdiscover.se/en/stable/) _(The plot allele module and the rep-seq analysis tools can be found under IgDiscover v0.12.4.dev22+g0bc3365)_. +* Supplemental Tables are available [here](https://doi.org/10.17632/mg7p5msrfs.1). + +#### Article + +DOI: [10.1016/j.immuni.2022.12.005](https://doi.org/10.1016/j.immuni.2022.12.005) + +Pushparaj, P., Nicoletto, A., Sheward, D. J., Das, H., Castro Dopico, X., Perez Vidakovics, L., Hanke, L., Chernyshev, M., Narang, S., Kim, S., Fischbach, J., Ekström, S., McInerney, G., Hällberg, B. M., Murrell, B., Corcoran, M., & Karlsson Hedestam, G. B. (2023). Immunoglobulin germline gene polymorphisms influence the function of SARS-CoV-2 neutralizing antibodies. In Immunity (Vol. 56, Issue 1, pp. 193-206.e7). + +#### Funding + +This project was funded the Swedish Research Council, grants from the SciLifeLab National COVID-19 Research Program financed by the Knut and Alice Wallenberg Foundation and the SciLifeLab Pandemic Laboratory Preparedness (PLP) program 2022–2023. Additional funding was provided from the Knut and Alice Wallenberg Foundation and the European Union’s Horizon 2020 research and innovation programme. + +#### Infrastructure + +Part of this work was supported by the Swedish National Infrastructure for Biological Mass Spectrometry (BioMS) and the SciLifeLab (Sweden) Integrated Structural Biology platform. All cryo-EM data were collected at the Karolinska Institutet’s 3D-EM facility, and surface plasmon resonance analysis was performed at the Protein Science Facility at Karolinska Institutet. diff --git a/content/english/pathogens/mpox.md b/content/english/pathogens/mpox.md index 4c7d10c8..4eb6770e 100644 --- a/content/english/pathogens/mpox.md +++ b/content/english/pathogens/mpox.md @@ -20,7 +20,7 @@ Information regarding mortality rate is limited, but there is significant variat In this section, we present announcements about ongoing research efforts primarily by (but not limited to) researchers and institutions based in Sweden. The intention is to 'highlight' these efforts as soon as possible, so that we can maximise their usefulness to researchers. -Please feel free to submit an announcement using the form below or by sending an e-mail to datacentre@scilifelab.se. +Please feel free to submit an announcement using the form below or by sending an e-mail to . Lists of data, tools, publications, and other potentially useful information are provided further down on the page and likely to be more complete. diff --git a/content/english/pathogens/voc/omicron.md b/content/english/pathogens/voc/omicron.md index 3bd47ff2..c57ae518 100644 --- a/content/english/pathogens/voc/omicron.md +++ b/content/english/pathogens/voc/omicron.md @@ -23,11 +23,11 @@ aliases: On this page we have compiled current knowledge on Omicron, the latest SARS-CoV-2 variant to be designated as a Variant of Concern (VOC). This includes available data, ongoing research efforts, initial findings, among other things related to Omicron. Please see [this page for information on other VOCs](../). -We make all possible efforts to track preprints, publications, and other resources related to Omicron and link them below. Researchers and organisations from around Sweden are also welcome to submit their datasets and to make relevant announcements on this page. If you feel like something is missing that should be included, or you wish to make a submission/announcement, please use the forms below or email us at datacentre@scilifelab.se. The team behind the COVID-19 Data Portal continuously monitors incoming suggestions, and new items are published as soon as possible. +We make all possible efforts to track preprints, publications, and other resources related to Omicron and link them below. Researchers and organisations from around Sweden are also welcome to submit their datasets and to make relevant announcements on this page. If you feel like something is missing that should be included, or you wish to make a submission/announcement, please use the forms below or email us at . The team behind the COVID-19 Data Portal continuously monitors incoming suggestions, and new items are published as soon as possible. ## Available data -This section presents a list of the available data related to Omicron (or related work that could benefit research into this variant) shared by researchers affiliated to a Swedish research institute. We welcome the submission of suggestions for additional datasets, either using the form below or by e-mail: datacentre@scilifelab.se. All submissions will be moderated by the Portal team before they appear on the page. +This section presents a list of the available data related to Omicron (or related work that could benefit research into this variant) shared by researchers affiliated to a Swedish research institute. We welcome the submission of suggestions for additional datasets, either using the form below or by e-mail: . All submissions will be moderated by the Portal team before they appear on the page. {{< pathogens_suggest_available_data origin="omicron" >}} @@ -59,7 +59,7 @@ Recent data highlights related to *Omicron* variant. All *Omicron* related data ## Ongoing research efforts -In this section, we present announcements about ongoing research efforts from researchers and organisations in Sweden. Please feel free to share what you are currently working on and/or your results, to seek collaborators to aid with aspects of your work (e.g. data, equipment, reagents, etc.). Any announcement useful for advacing research on Omicron is welcome. Feel free to submit the information either by using the form below or by sending us an e-mail to datacentre@scilifelab.se. +In this section, we present announcements about ongoing research efforts from researchers and organisations in Sweden. Please feel free to share what you are currently working on and/or your results, to seek collaborators to aid with aspects of your work (e.g. data, equipment, reagents, etc.). Any announcement useful for advacing research on Omicron is welcome. Feel free to submit the information either by using the form below or by sending us an e-mail to . {{< pathogens_add_announcement origin="omicron" >}} @@ -114,6 +114,6 @@ Here we list a number of useful resources related to the new *SARS-CoV-2 Omicron ## Get in touch with us -Do you have suggestions or other feedback? Get in touch with us by e-mailing datacentre@scilifelab.se. +Do you have suggestions or other feedback? Get in touch with us by e-mailing . {{< omicron_page_form_scripts >}} diff --git a/content/english/privacy.md b/content/english/privacy.md index 73cc0a6b..26e0ceba 100644 --- a/content/english/privacy.md +++ b/content/english/privacy.md @@ -22,7 +22,7 @@ You can opt out of your Log Data being collected below: Our **Service** contains a number of forms through which the website visitors may choose to get in touch with us or send us suggestions. The website visitors may choose to provide their personal information such as, for example, their name and e-mail address, through these forms. -The following parties will have access to processing the personal data provided through the forms: SciLifeLab Data Centre, Uppsala University. Your personal data will be deleted when no longer needed, or when stipulated by the archival rules for the university as a government authority. If you want to update or remove your personal data please contact the controller SciLifeLab Data Centre at Uppsala University using datacentre@scilifelab.se. +The following parties will have access to processing the personal data provided through the forms: SciLifeLab Data Centre, Uppsala University. Your personal data will be deleted when no longer needed, or when stipulated by the archival rules for the university as a government authority. If you want to update or remove your personal data please contact the controller SciLifeLab Data Centre at Uppsala University using . ## Links to Other Sites diff --git a/content/english/share-data.md b/content/english/share-data.md index 59e583cf..fb50a71a 100644 --- a/content/english/share-data.md +++ b/content/english/share-data.md @@ -95,6 +95,6 @@ Below are our data submission guidelines for each specific data type. You can al ## Data sharing support -All researchers affiliated with a university or research institute in Sweden working on research topics relevant to pandemic preparedness can receive free individual consultations and hands-on help within reasonable bounds from the *Swedish COVID-19 & Pandemic Preparedness Portal* team. Simply send an email to datacentre@scilifelab.se. Your question will be assigned to a data steward with relevant expertise who can either help you directly or point you to the correct tool or service. +All researchers affiliated with a university or research institute in Sweden working on research topics relevant to pandemic preparedness can receive free individual consultations and hands-on help within reasonable bounds from the *Swedish COVID-19 & Pandemic Preparedness Portal* team. Simply send an email to . Your question will be assigned to a data steward with relevant expertise who can either help you directly or point you to the correct tool or service. You are welcome to send both general questions about best approaches to research data management, data management plans (DMPs), reproducibility, FAIR, and open science as well as specific questions about your research projects such as which repository to choose to deposit data, what the suitable metadata standards would be, which file formats to use, etc. In some cases the data stewards can act as brokers and submit data to repositories on your behalf. diff --git a/content/english/support.md b/content/english/support.md index 92dc2701..6252950e 100644 --- a/content/english/support.md +++ b/content/english/support.md @@ -14,13 +14,13 @@ Below is an overview of relevant support services (free or against a fee) provid

Support on using the Portal

-If you have questions or suggestions for the *Swedish COVID-19 & Pandemic Preparedness Data Portal*, you can get in touch with the Portal team either by filling out [our contact form](/contact/) or by sending an email to datacentre@scilifelab.se. +If you have questions or suggestions for the *Swedish COVID-19 & Pandemic Preparedness Data Portal*, you can get in touch with the Portal team either by filling out [our contact form](/contact/) or by sending an email to . Get in touch with the Portal team

Data management support

-All researchers affiliated with a university or research institute in Sweden working on research topics relevant to pandemic preparedness can receive free individual consultations and hands-on help within reasonable bounds from the *Swedish COVID-19 & Pandemic Preparedness Portal* team. Simply send an email to datacentre@scilifelab.se. Your question will be assigned to a data steward with relevant expertise who can either help you directly or point you to the correct tool or service. +All researchers affiliated with a university or research institute in Sweden working on research topics relevant to pandemic preparedness can receive free individual consultations and hands-on help within reasonable bounds from the *Swedish COVID-19 & Pandemic Preparedness Portal* team. Simply send an email to . Your question will be assigned to a data steward with relevant expertise who can either help you directly or point you to the correct tool or service. You are welcome to send both general questions about best approaches to research data management, data management plans (DMPs), reproducibility, FAIR, and open science as well as specific questions about your research projects such as which repository to choose to deposit data, what the suitable metadata standards would be, which file formats to use, etc. In some cases the data stewards can act as brokers and submit data to repositories on your behalf. diff --git a/content/english/updates/RECOVAC.md b/content/english/updates/RECOVAC.md index 33959887..6055f4eb 100644 --- a/content/english/updates/RECOVAC.md +++ b/content/english/updates/RECOVAC.md @@ -14,4 +14,4 @@ The new dashboard is generally subdivded into two sections; data related to the New data will be provided to the portal team by the RECOVAC project every 1-3 months. The visualisations on the dashboard will be updated as quickly as possible after data is made available. Data is currently available up until late Dec 2021. Not all data is available for exactly the same period of time, but it is possible to align the timeframes of comparable datasets. -*The Swedish COVID-19 & Pandemic Preparedness Portal invites other researchers affiliated to a Swedish university or research institute to contact us about featuring their work. We are happy to work with you produce pages/dashboards on projects focused on infectious diseases (including COVID-19), pandemic preparedness, or antibiotic resistance. You can get in touch by sending an email to datacentre@scilifelab.se or using our [contact form](https://www.covid19dataportal.se/contact/).* +*The Swedish COVID-19 & Pandemic Preparedness Portal invites other researchers affiliated to a Swedish university or research institute to contact us about featuring their work. We are happy to work with you produce pages/dashboards on projects focused on infectious diseases (including COVID-19), pandemic preparedness, or antibiotic resistance. You can get in touch by sending an email to or using our [contact form](https://www.covid19dataportal.se/contact/).* diff --git a/content/english/updates/ena_tutorial.md b/content/english/updates/ena_tutorial.md index 1ffbf79e..f710c53e 100644 --- a/content/english/updates/ena_tutorial.md +++ b/content/english/updates/ena_tutorial.md @@ -20,4 +20,4 @@ Today, the Swedish COVID-19 Data Portal is launching [a tutorial on submitting S [**Go to the tutorial for SARS-CoV-2 genome data submission to ENA**](/support_services/tutorial_ena/tutorial_ena_intro/) -Please note that the Portal team is also happy to function as a **broker** for researchers who have a large number of sequences and who would like to submit these to ENA. We offer this service to Swedish life science researchers. To find out more, send an email to datacentre@scilifelab.se and tell us how we can help you. +Please note that the Portal team is also happy to function as a **broker** for researchers who have a large number of sequences and who would like to submit these to ENA. We offer this service to Swedish life science researchers. To find out more, send an email to and tell us how we can help you. diff --git a/content/english/updates/first_year.md b/content/english/updates/first_year.md index 45c1c298..c247e1ae 100644 --- a/content/english/updates/first_year.md +++ b/content/english/updates/first_year.md @@ -42,7 +42,7 @@ Finally, the Portal team has multiple plans for the future. For example, work is > Johan Rung, Head of SciLifeLab Data Centre and leader for the Portal team says: "Moving forward, the COVID-19 Data Portal will build on the features already developed and made available during the last year. In addition, just as the societal response to the pandemic is currently in the process of moving towards vaccines and future pandemic preparedness, the Portal will develop new features to meet these new needs. We are thankful for researchers that choose to share their data and code, as this allows for new analyses, which not only leads to new results and new knowledge, but also increases reproducibility. Our aim is to further improve our support to the important community efforts involved in responding to this pandemic.” -The [team behind the Swedish COVID-19 Data Portal](/about) always welcomes collaboration suggestions, questions about publishing and finding data, data management in general, and any feedback regarding the Portal itself. Please do not hesitate to get in touch with us [using our contact form](/contact) or by sending us an email to datacentre@scilifelab.se. +The [team behind the Swedish COVID-19 Data Portal](/about) always welcomes collaboration suggestions, questions about publishing and finding data, data management in general, and any feedback regarding the Portal itself. Please do not hesitate to get in touch with us [using our contact form](/contact) or by sending us an email to . Below you can watch a short video describing the Portal and demonstrating some of the sections. diff --git a/content/english/updates/sample_collection_database.md b/content/english/updates/sample_collection_database.md index c376bda8..3c6fcc34 100644 --- a/content/english/updates/sample_collection_database.md +++ b/content/english/updates/sample_collection_database.md @@ -21,7 +21,7 @@ Both *healthcare sample collections* and *research sample collections* are liste [SciLifeLab](https://www.scilifelab.se/news/database-on-covid-19-sample-collections-and-biobanks-launched) and [Biobank Sweden](https://biobanksverige.se/provsamlingar-publicerade-i-covid-19-data-portal-sweden-underlattar-forskning-om-covid-19/) see the Swedish COVID-19 Sample Collection Database as an important tool for accelerating the COVID-19 research in Sweden. Johan Rung, Head of SciLifeLab Data Centre, says: "We believe this new database will simplify finding samples for new COVID-19 studies. The collaboration with Biobank Sweden has been very positive and we are particularly happy to be able to provide a service that combines information from both healthcare and research sample collections in the same place. Increased availability of both data and samples is central to strengthening our pandemic preparedness in Sweden." -Those wishing to submit information about their sample collections to the database should [contact Biobank Sverige](https://biobanksverige.se/provsamlingar-publicerade-i-covid-19-data-portal-sweden-underlattar-forskning-om-covid-19/) (the linked page also contains forms for adding new collections to the database). Questions, comments, or suggestions regarding the database can be sent to datacentre@scilifelab.se. +Those wishing to submit information about their sample collections to the database should [contact Biobank Sverige](https://biobanksverige.se/provsamlingar-publicerade-i-covid-19-data-portal-sweden-underlattar-forskning-om-covid-19/) (the linked page also contains forms for adding new collections to the database). Questions, comments, or suggestions regarding the database can be sent to . #### Relevant links diff --git a/content/english/updates/section_register_based_research.md b/content/english/updates/section_register_based_research.md index c049afba..6a6f4491 100644 --- a/content/english/updates/section_register_based_research.md +++ b/content/english/updates/section_register_based_research.md @@ -10,6 +10,6 @@ The Swedish COVID-19 Data Portal is launching [a section on register-based resea Sweden has a long tradition of record keeping of registers containing person data and many of the health registers in Sweden have data from the 1950s and forward. A register contains personal data (health data, demographic data, socioeconomic data, etc.) connected to personal numbers, a unique identifier, that allows linking between registers. Register-based data can contribute with important real-patient data aspects to research. One of such registers is the [Swedish Intensive Care Registry](https://www.icuregswe.org/en/) containing daily inpatients with COVID-19 from the Swedish intensive care departments; this register has been used extensively in both research and for policy-making during the last two years. -We invite researchers working with register-based data and affiliated to a Swedish research institute to get in touch with us about adding information about their research data or visualisations on this page; send us an email to datacentre@scilifelab.se. +We invite researchers working with register-based data and affiliated to a Swedish research institute to get in touch with us about adding information about their research data or visualisations on this page; send us an email to . To facilitate register-based research, the Swedish Research Council maintains [registerforskning.se](https://registerforskning.se), a hub with general information about register-based research, as well as [Register Utiliser Tool (RUT)](http://rut.registerforskning.se/), a tool which allows researchers to explore metadata from various registers and to match data stored in different registers. diff --git a/content/svenska/about/_index.md b/content/svenska/about/_index.md index 25fccef2..a4c3e1aa 100644 --- a/content/svenska/about/_index.md +++ b/content/svenska/about/_index.md @@ -35,7 +35,7 @@ Portalen drivs av [SciLifeLab Data Centre](https://scilifelab.se/data/) och sama Den här webbplatsen är byggd med hjälp av [Hugo](https://gohugo.io/) och använder [Bootstrap](https://getbootstrap.com/) ramverket, [DataTables](https://datatables.net/) används för att skapa tabeller, [Vega/Vega-Lite](https://vega.github.io/vega-lite/) och [Plotly](https://plotly.com/) för interaktiv grafik. Koden är öppen källkod ([MIT-licens](https://choosealicense.com/licenses/mit/)) och [finns tillgänglig på GitHub](https://github.com/ScilifelabDataCentre/covid-portal). Vi välkomnar att Portalens källkod återanvänds och att forskare bidrar till webbsidans källkod. -Om du vill bidra med innehåll eller har förslag på förbättringar av webbplatsen, vänligen kontakt oss på datacentre@scilifelab.se +Om du vill bidra med innehåll eller har förslag på förbättringar av webbplatsen, vänligen kontakt oss på #### Portalens historia @@ -47,7 +47,7 @@ Från 2022 har Portalen utvidgats till att även inkluderar forskningsämnen med Från starten har Portalen drivits av SciLifeLab Data Centre och samarbetspartners, med stöd och input av forskarsamhället. Många personer har varit involverade i uppbyggnad, drift och utvecklingsarbete av webbsidans källkod och Portalens innehåll. En ofullständig lista över dessa personer som bidragit finns tillgänglig på GitHub. Det nuvarande dedikerade teamet som aktivt arbetar med Portalen visas nedan. -Vi hjälper er gärna med support, tar emot förslag på förbättringar av nuvarande sektioner eller förslag på nya sektioner samt svarar på frågor relaterade till datahantering, datadelning och Portalens innehåll. Maila oss på datacentre@scilifelab.se. +Vi hjälper er gärna med support, tar emot förslag på förbättringar av nuvarande sektioner eller förslag på nya sektioner samt svarar på frågor relaterade till datahantering, datadelning och Portalens innehåll. Maila oss på .
diff --git a/content/svenska/biobanks/_index.md b/content/svenska/biobanks/_index.md index d4d33e7e..43cebfbe 100644 --- a/content/svenska/biobanks/_index.md +++ b/content/svenska/biobanks/_index.md @@ -22,7 +22,7 @@ I september 2021 innehåller det svenska Covid-19 Provsamlingsregistret **35 ### Registrera en provsamling i Covid-19 Provsamlingsregistret -För att registrera en provsamling i Covid-19 Provsamlingsregistret [kontaktas Biobank Sverige](https://biobanksverige.se/provsamlingar-publicerade-i-covid-19-data-portal-sweden-underlattar-forskning-om-covid-19/) (på denna sida finner du länkar för att registrera olika typer av provsamlingar). För frågor, kommentarer, eller förslag om provsamlingsregistret kontakta datacentre@scilifelab.se. +För att registrera en provsamling i Covid-19 Provsamlingsregistret [kontaktas Biobank Sverige](https://biobanksverige.se/provsamlingar-publicerade-i-covid-19-data-portal-sweden-underlattar-forskning-om-covid-19/) (på denna sida finner du länkar för att registrera olika typer av provsamlingar). För frågor, kommentarer, eller förslag om provsamlingsregistret kontakta . ### Ansvariga organisationer diff --git a/content/svenska/dashboards/post_covid.md b/content/svenska/dashboards/post_covid.md index ff7eebfe..b0a40c71 100644 --- a/content/svenska/dashboards/post_covid.md +++ b/content/svenska/dashboards/post_covid.md @@ -170,7 +170,7 @@ Dessa grafer visar antal vårdkontakter för patienter som diagnostiserats med e ## Pågående forskningsprojekt -Detta är en manuellt sammanställd översikt över forskningsprojekt med fokus på postcovid som fått forskningsanslag från större svenska anslagsgivare. Detta är inte en fullständig lista. Listan uppdateras kontinuerligt med nya projekt. Om du har ett forskningsprojekt inom området som du vill skall läggas upp här [kontakta oss på](/contact/) SciLifeLab Data Centre på datacentre@scilifelab.se. En lista över alla Covid-19 relaterade forskningsprojekt med anslag från större svenska anslagsgivare se [detta avsnitt av Covid-19 dataportalen](/projects/ongoing/). +Detta är en manuellt sammanställd översikt över forskningsprojekt med fokus på postcovid som fått forskningsanslag från större svenska anslagsgivare. Detta är inte en fullständig lista. Listan uppdateras kontinuerligt med nya projekt. Om du har ett forskningsprojekt inom området som du vill skall läggas upp här [kontakta oss på](/contact/) SciLifeLab Data Centre på . En lista över alla Covid-19 relaterade forskningsprojekt med anslag från större svenska anslagsgivare se [detta avsnitt av Covid-19 dataportalen](/projects/ongoing/). {{< display_funded_projects filter_variable="post_covid" >}} diff --git a/content/svenska/dashboards/wastewater/covid_quant_GU.md b/content/svenska/dashboards/wastewater/covid_quant_GU.md index db3e9bd7..de5561b2 100644 --- a/content/svenska/dashboards/wastewater/covid_quant_GU.md +++ b/content/svenska/dashboards/wastewater/covid_quant_GU.md @@ -66,7 +66,7 @@ Ingående avloppsvattenprover insamlas från Ryaverkets avloppsreningsverk (eng. ## Dataset -**Kontakt:** helene.norder@gu.se +**Kontakt:** **Nedladdning av data:** [Quantification of SARS-CoV-2 and enteric viruses in wastewater](https://blobserver.dckube.scilifelab.se/blob/wastewater_data_gu_allviruses.xlsx). Resultat finns tillgängliga för mängd SARS-CoV-2 från vecka 7 2020 (ett mindre uppehåll under vintern 2022-2023) , och för enterovirus från vecka 2 2023. Data uppdateras veckovis.\ diff --git a/content/svenska/dashboards/wastewater/covid_quant_KTH.md b/content/svenska/dashboards/wastewater/covid_quant_KTH.md index d33a7df2..3e877c0c 100644 --- a/content/svenska/dashboards/wastewater/covid_quant_KTH.md +++ b/content/svenska/dashboards/wastewater/covid_quant_KTH.md @@ -88,7 +88,7 @@ Notera också att även om samma metoder används för alla städer som visas p ## Dataset -**Kontakt:** zeynepcg@kth.se +**Kontakt:** **Ladda ner data:** [N3-genkopiatal per PMMoV-genkopiatal; Excelfil.](https://blobserver.dckube.scilifelab.se/blob/stockholm_wastewater_method_Sep_2021.xlsx). Data tillgänglig (delvis) från och med vecka 16 2020; uppdateras varje vecka. diff --git a/content/svenska/dashboards/wastewater/covid_quant_SLU.md b/content/svenska/dashboards/wastewater/covid_quant_SLU.md index 52d0696d..3cf6f0f5 100644 --- a/content/svenska/dashboards/wastewater/covid_quant_SLU.md +++ b/content/svenska/dashboards/wastewater/covid_quant_SLU.md @@ -110,7 +110,7 @@ Forskargruppen delar även en rapport som sammanfattar den senaste informationen ## Dataset -**Kontakt:** anna.szekely@slu.se and maja.malmberg@slu.se +**Kontakt:** and **Ladda ner data:** [N1-gene copy number per PMMoV gene copy number, CSV file.](https://datagraphics.dckube.scilifelab.se/dataset/0ac8fa02871745048491de74e5689da9.csv). Data are available from week 38 of 2020; updated weekly. diff --git a/content/svenska/privacy.md b/content/svenska/privacy.md index 3df571fc..015a211e 100644 --- a/content/svenska/privacy.md +++ b/content/svenska/privacy.md @@ -25,7 +25,7 @@ Vår **tjänst** innehåller ett antal formulär vilka webbsidans besökare kan Följande parter kommer ha tillgång till personuppgifter som anges i dessa formulär: SciLifeLab Data Centre, Uppsala universitet. -Dina personuppgifter kommer att raderas när de inte längre är nödvändiga eller enligt universitetets policy for arkivering. Om du vill uppdatera eller radera dina personuppgifter vänligen kontakta controller SciLifeLab Data Centre vid Uppsala universitet via epost datacentre@scilifelab.se. +Dina personuppgifter kommer att raderas när de inte längre är nödvändiga eller enligt universitetets policy for arkivering. Om du vill uppdatera eller radera dina personuppgifter vänligen kontakta controller SciLifeLab Data Centre vid Uppsala universitet via epost . ## Länkar till andra webbplatser diff --git a/content/svenska/share-data.md b/content/svenska/share-data.md index 06829851..1467eec7 100644 --- a/content/svenska/share-data.md +++ b/content/svenska/share-data.md @@ -100,6 +100,6 @@ Below are our data submission guidelines for each specific data type. You can al ## Data sharing support -All researchers affiliated with a university or research institute in Sweden working on research topics relevant to pandemic preparedness can receive free individual consultations and hands-on help within reasonable bounds from the *Swedish COVID-19 & Pandemic Preparedness Portal* team. Simply send an email to datacentre@scilifelab.se. Your question will be assigned to a data steward with relevant expertise who can either help you directly or point you to the correct tool or service. +All researchers affiliated with a university or research institute in Sweden working on research topics relevant to pandemic preparedness can receive free individual consultations and hands-on help within reasonable bounds from the *Swedish COVID-19 & Pandemic Preparedness Portal* team. Simply send an email to . Your question will be assigned to a data steward with relevant expertise who can either help you directly or point you to the correct tool or service. You are welcome to send both general questions about best approaches to research data management, data management plans (DMPs), reproducibility, FAIR, and open science as well as specific questions about your research projects such as which repository to choose to deposit data, what the suitable metadata standards would be, which file formats to use, etc. In some cases the data stewards can act as brokers and submit data to repositories on your behalf. diff --git a/content/svenska/support.md b/content/svenska/support.md index d5c0f04e..7d5905d5 100644 --- a/content/svenska/support.md +++ b/content/svenska/support.md @@ -14,13 +14,13 @@ En översikt över relevanta supporttjänster (avgiftsfria eller avgiftsbelagda)

Supporttjänster om Portalen

-Om du har frågor eller förslag för den *Svenska Dataportalen för Covid-19 & Pandemisk Beredskap*, kontakta teamet som arbetar med Portalen antingen genom att fylla i [kontaktformuläret](/sv/contact) eller via epost till datacentre@scilifelab.se. +Om du har frågor eller förslag för den *Svenska Dataportalen för Covid-19 & Pandemisk Beredskap*, kontakta teamet som arbetar med Portalen antingen genom att fylla i [kontaktformuläret](/sv/contact) eller via epost till . Kontakta Portalenteamet

Datahanteringsstöd

-Alla forskare som är affilierade till ett svenskt lärosäte och arbetar inom forskningsfältet pandemisk beredskap har möjlighet till avgiftsfria individuella konsultationer och hands-on stöd (i mån av tid) från Portalenteamet. Skicka en förfrågan till datacentre@scilifelab.se. Din fråga kommer tas omhand av en datasamordnare med relevant expertis inom det område du behöver support inom alternativt så hänvisas du ett tillgängligt verktyg eller tjänst. +Alla forskare som är affilierade till ett svenskt lärosäte och arbetar inom forskningsfältet pandemisk beredskap har möjlighet till avgiftsfria individuella konsultationer och hands-on stöd (i mån av tid) från Portalenteamet. Skicka en förfrågan till . Din fråga kommer tas omhand av en datasamordnare med relevant expertis inom det område du behöver support inom alternativt så hänvisas du ett tillgängligt verktyg eller tjänst. Vi välkomnar både generella frågor om ”best practise” datahantering, datahanteringplaner (DMPs), reproducerbara data, FAIR och öppen vetenskap samt specifika frågor relaterade till datadelning, metadata standarder, filformat etc. I vissa fall kan en datasamordnare hjälpa till att ladda upp data till ett datarepositorie för den enskilde forskaren. diff --git a/data/available_datasets.json b/data/available_datasets.json index 65e98f20..0343a81c 100644 --- a/data/available_datasets.json +++ b/data/available_datasets.json @@ -1,6 +1,117 @@ { - "last_updated": "2023-04-05", + "last_updated": "2023-05-04", "datasets": [ + { + "doi": "10.1038/s41598-023-33168-1", + "available_items": [ + { + "type": "data", + "repo_name": "GenBank", + "accession_number": "", + "description": "Nucleotide sequence are available as assembled FASTA consensus sequences at GenBank. Accession-ID: OP585690-OP585783", + "data_type": [ + "Genomics & transcriptomics data" + ], + "data_url": "https://www.ncbi.nlm.nih.gov/nuccore/?term=OP585690:OP585783[pacc]" + } + ], + "title": "Comparison of SARS-CoV-2 whole genome sequencing using tiled amplicon enrichment and bait hybridization", + "issue": "1", + "volume": "13", + "publisher": "Springer Science and Business Media LLC", + "published": "2023-04-20", + "author": [ + "Koskela von Sydow A.", + "Lindqvist C. M.", + "Asghar N.", + "Johansson M.", + "Sundqvist M." + ] + }, + { + "doi": "10.3389/fviro.2023.1128253", + "available_items": [ + { + "type": "data", + "repo_name": "GenBank", + "accession_number": "ON086926", + "description": "The HC sequences of CAB-F52 anti-SARS-CoV-2 immunoglobulin heavy chain variable region mRNA", + "data_type": [ + "Genomics & transcriptomics data" + ], + "data_url": "https://www.ncbi.nlm.nih.gov/nuccore/ON086926" + }, + { + "type": "data", + "repo_name": "GenBank", + "accession_number": "ON086941", + "description": "The LC sequences of CAB-F52 anti-SARS-CoV-2 immunoglobulin heavy chain variable region mRNA", + "data_type": [ + "Genomics & transcriptomics data" + ], + "data_url": "https://www.ncbi.nlm.nih.gov/nuccore/ON086941.1/" + }, + { + "type": "data", + "repo_name": "ProteomeXchange", + "accession_number": "PXD031945", + "description": "The hydrogen–deuterium exchange mass spectrometry data", + "data_type": [ + "Protein data" + ], + "data_url": "https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD031945" + } + ], + "title": "Frequent use of IGHV3-30-3 in SARS-CoV-2 neutralizing antibody responses", + "issue": "", + "volume": "3", + "publisher": "Frontiers Media SA", + "published": "2023-03-01", + "author": [ + "Pushparaj P.", + "Nicoletto A.", + "Castro Dopico X.", + "Sheward D. J.", + "Kim S." + ] + }, + { + "doi": "10.1038/s41380-023-02062-7", + "available_items": [ + { + "type": "data", + "repo_name": "OSF", + "accession_number": "", + "description": "Anonymised databases with the individual participant data and the metadata for Bayesian analyses, along with a data dictionary", + "data_type": [ + "Other data" + ], + "data_url": "https://osf.io/m5cvj/" + }, + { + "type": "protocol", + "repo_name": "OSF", + "accession_number": "", + "description": "The Study Protocol and Bayesian Statistical Analysis Plan", + "data_type": [ + "Other data" + ], + "data_url": "https://osf.io/2xn5m/" + } + ], + "title": "Treating intrusive memories after trauma in healthcare workers: a Bayesian adaptive randomised trial developing an imagery-competing task intervention", + "issue": "", + "volume": "", + "publisher": "Springer Science and Business Media LLC", + "published": "2023-04-26", + "author": [ + "Ramineni V.", + "Millroth P.", + "Iyadurai L.", + "Jaki T.", + "Kingslake J." + ] + }, { "doi": "10.1016/j.tbench.2023.100088", "available_items": [ diff --git a/static/highlights/banners/igh_antibody_genes.jpg b/static/highlights/banners/igh_antibody_genes.jpg new file mode 100644 index 00000000..7f947a22 Binary files /dev/null and b/static/highlights/banners/igh_antibody_genes.jpg differ diff --git a/static/highlights/banners/igh_antibody_genes_small.jpg b/static/highlights/banners/igh_antibody_genes_small.jpg new file mode 100644 index 00000000..4d758a8f Binary files /dev/null and b/static/highlights/banners/igh_antibody_genes_small.jpg differ