annotate differences #20

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FreakyBytes opened this Issue Jan 30, 2017 · 0 comments

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FreakyBytes commented Jan 30, 2017

Trac Ticket #20

component: code
owner: martin
reporter: martin
created: 2015-10-02 09:45:49
milestone:
type: task
version:
keywords:

as soon as bives-core:#44 is done we should annotate our patches with terms from comodi (​http://purl.org/net/comodi)

comment 1

time: 2015-11-07 10:02:18
author: anonymous

implement and test change of:

  • variable definition
  • component definition
  • reaction change in component
  • math change in component
  • cellml model name/id
  • annotations
  • hierachry
  • variable connection

comment 2

time: 2015-11-08 17:23:54
author: Martin Scharm martin@binfalse.de

In None:


first version of cellml patches with annotations [see #20]

ready to implement special cellml procedures

comment 3

time: 2015-11-08 17:24:02
author: Martin Scharm martin@binfalse.de

In None:


first version really supporting patch annotations [see #20]

comment 4

time: 2015-11-08 17:24:10
author: Martin Scharm martin@binfalse.de

In None:


implement first cellml specific annotations [see #20]

now we have the infrastructure to go big :)

comment 5

time: 2015-11-08 17:24:24
author: Martin Scharm martin@binfalse.de

In None:


change math to be valid in annotation test doc [see #20]

comment 6

time: 2015-11-08 17:24:32
author: Martin Scharm martin@binfalse.de

In None:


added first essential cellml annotations [see #20]

so far, the following stuff gets annotated:

* spec change
* model rename
* variable def/name change
* variable del/ins/move
* component rename
* component del/mov/ins
* math change or ins/del/mov

comment 7

time: 2015-11-08 17:24:39
author: Martin Scharm martin@binfalse.de

In None:


add tests for cellml annotations [see #20]

currently tests for:

* CellmlSpec
* ChangeMath
* DelMath
* VariableDe
* VariableConcDiffers
* ComponentName
* VariableName
* no differences

comment 8

time: 2015-11-08 17:24:54
author: Martin Scharm martin@binfalse.de

In None:


check for insert math [see #20]

comment 9

time: 2015-11-08 17:25:02
author: Martin Scharm martin@binfalse.de

In None:


add detection+annotation of reaction changes [see #20]

* reaction change
* reaction del/ins
* reaction reversibility change

also added corresponding tests

comment 10

time: 2015-11-08 17:25:10
author: Martin Scharm martin@binfalse.de

In None:


implement annotation for unit changes [see #20]

* del/ins of units
* rename
* change of units

respecting global units as well as units defined locally in components

comment 11

time: 2015-11-08 17:25:19
author: Martin Scharm martin@binfalse.de

In None:


add support for variable connection annotations [see #20]

now also recognising changes in variable connections...

comment 12

time: 2015-11-08 17:25:26
author: Martin Scharm martin@binfalse.de

In None:


add support for annotation of hierarchy changes [see #20]

comment 13

time: 2015-11-08 17:25:32
author: Martin Scharm martin@binfalse.de

In None:


implement support for annotating changes in textual annotations [see #20]

comment 14

time: 2015-11-08 17:25:37
author: Martin Scharm martin@binfalse.de

In None:


releasing first official version supporting annotations [fixes #20]

comment 15

time: 2015-11-08 17:25:37
author: Martin Scharm martin@binfalse.de

Updated resolution to fixed

comment 16

time: 2015-11-08 17:25:37
author: Martin Scharm martin@binfalse.de

Updated status to closed

comment 17

time: 2016-03-11 23:24:05
author: Martin Scharm martin@binfalse.de

In None:


update to latest bives version

this does not include annotations by default [see #20]

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