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seqware

This is the SeqWare Project's main repo.

Updated Jun 23, 2016

Java 1 0

oozie-sge

This is a repository for the SeqWare Oozie-SGE plugin. It lives outside of the main SeqWare repository because it's really an extension of Oozie to support SGE and not specific to SeqWare per se.

Updated Jun 22, 2016

Shell 0 0

seqware-bag

Ansible playbooks for deploying SeqWare with metadata for Bindle

Updated May 26, 2016

Shell 0 0

seqware_test_environment

Sets up a test environment for SeqWare continuous integration testing on Travis-CI

Updated May 24, 2016

documentation_builder

This container builds our documentation using nanoc

Updated May 12, 2016

HTML 0 0

unstable.seqware.io

Repository for hosting our 1.1 docs in progress

Updated May 6, 2016

seqware_whitestar

This is the container that houses SeqWare WhiteStar with a minimal set of dependencies

Updated Feb 10, 2016

Shell 0 0

seqware_full

This is the container that houses SeqWare with a full set of dependencies including SGE, Hadoop, and Oozie

Updated Nov 30, 2015

HTML 1 1

seqware.github.com

SeqWare home pages

Updated Nov 18, 2015

Java 2 2

seqware-sandbox

A location where we can explore new SeqWare sub-projects, tools, and prototypes before they are ready for the main repo.

Updated Nov 16, 2015

Perl 2 4

public-workflows

A place to collaborate on public SeqWare workflows

Updated Jul 21, 2015

portal

Provided as-is, this is the unsupported SeqWare Portal as of the 1.1.0-beta

Updated Jan 7, 2015

Java 3 1

queryengine

A HBase backed variant database for performing queries on VCF-style data

Updated Apr 2, 2014

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