Suite for image segmentation, analysis of reconstituted spindles
Matlab
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ellipse
gui
image
misc
mouse
segmentation
spindles
LICENSE.md
README.md
startup.m
user_manual.m

README.md

SpinMaster

Code to analyze dynamics of spindles See user_manual.m for usage See http://www.ncbi.nlm.nih.gov/pubmed/24630121

This code includes :

  • software to load and process microscopy images
  • a GUI to locate objects on an image
  • these objects can be areas (regions) or items (spindes)
  • saving/loading and editing of such objects
  • creating time sequence of individual objects (trajectories)
  • statistical analysis of trajectories

******** Licence information ************

This codes includes tiffread, a GPL3-licenced software written by François Nédélec

If you would like to acknowledge SpinMaster in a publication, please cite the article for which the macro was first written:

Spindle assembly on immobilized chromatin micro patterns. Céline Pugieux, Serge Dmitrieff, Katarzyna Tarnawska, François Nédélec. Reconstituting the Cytoskeleton, Edited by Ron Vale. Methods in Enzymology 540, 435-448, 2014.

François Nédélec -- http://www.cytosim.org Serge Dmitrieff -- http://biophysics.fr