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A computational method to correct boundary inconsistencies in the SwissProt Database
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static
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README.md
alignment.txt
alignment_out.txt
app.py
belvu.txt
msa.txt
msa2.txt
requirements.txt
runtime.txt
swissprot.txt

README.md

MDA

  • pip install -r requirements.txt to start.
  • Paste in your Uniprot Multiple Sequence Alignment into msa2.txt.

The application runs in a webapp with some graphical table displays or via command line.

Running WebApplication

  • python3 app.py to run the web app (relies on hard coded msa2.txt file)

Running from Command Line

  • Comment out those lines under if name == "main"
  • call printMDA using your target query (the sequence identifier)
  • Note: The sequence identifier must be within the MSA.

The project is live (using msa2.txt as an input MSA) on https://mdadevelopment.herokuapp.com/

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