- pip install -r requirements.txt to start.
- Paste in your Uniprot Multiple Sequence Alignment into msa2.txt.
The application runs in a webapp with some graphical table displays or via command line.
- python3 app.py to run the web app (relies on hard coded msa2.txt file)
Running from Command Line
- Comment out those lines under if name == "main"
- call printMDA using your target query (the sequence identifier)
- Note: The sequence identifier must be within the MSA.