diff --git a/.changeset/serious-vans-sin.md b/.changeset/serious-vans-sin.md
new file mode 100644
index 00000000000..9ba84efa91b
--- /dev/null
+++ b/.changeset/serious-vans-sin.md
@@ -0,0 +1,5 @@
+---
+'@shopify/polaris': minor
+---
+
+[FiltersBar] Fixed bug where filters would disappear from the FiltersBar when clicking the Clear all button
diff --git a/polaris-react/src/components/Filters/Filters.stories.tsx b/polaris-react/src/components/Filters/Filters.stories.tsx
index dfefa8900db..338eb97c34a 100644
--- a/polaris-react/src/components/Filters/Filters.stories.tsx
+++ b/polaris-react/src/components/Filters/Filters.stories.tsx
@@ -1516,3 +1516,204 @@ export function WithFilterBarHidden() {
     </div>
   );
 }
+
+export function WithAllFiltersPinned() {
+  const [accountStatus, setAccountStatus] = useState(null);
+  const [moneySpent, setMoneySpent] = useState(null);
+  const [taggedWith, setTaggedWith] = useState('');
+  const [queryValue, setQueryValue] = useState('');
+
+  const handleAccountStatusChange = useCallback(
+    (value) => setAccountStatus(value),
+    [],
+  );
+  const handleMoneySpentChange = useCallback(
+    (value) => setMoneySpent(value),
+    [],
+  );
+  const handleTaggedWithChange = useCallback(
+    (value) => setTaggedWith(value),
+    [],
+  );
+  const handleFiltersQueryChange = useCallback(
+    (value) => setQueryValue(value),
+    [],
+  );
+  const handleAccountStatusRemove = useCallback(
+    () => setAccountStatus(null),
+    [],
+  );
+  const handleMoneySpentRemove = useCallback(() => setMoneySpent(null), []);
+  const handleTaggedWithRemove = useCallback(() => setTaggedWith(''), []);
+  const handleQueryValueRemove = useCallback(() => setQueryValue(''), []);
+  const handleFiltersClearAll = useCallback(() => {
+    handleAccountStatusRemove();
+    handleMoneySpentRemove();
+    handleTaggedWithRemove();
+    handleQueryValueRemove();
+  }, [
+    handleAccountStatusRemove,
+    handleMoneySpentRemove,
+    handleQueryValueRemove,
+    handleTaggedWithRemove,
+  ]);
+
+  const filters = [
+    {
+      key: 'accountStatus',
+      label: 'Account status',
+      filter: (
+        <ChoiceList
+          title="Account status"
+          titleHidden
+          choices={[
+            {label: 'Enabled', value: 'enabled'},
+            {label: 'Not invited', value: 'not invited'},
+            {label: 'Invited', value: 'invited'},
+            {label: 'Declined', value: 'declined'},
+          ]}
+          selected={accountStatus || []}
+          onChange={handleAccountStatusChange}
+          allowMultiple
+        />
+      ),
+      shortcut: true,
+      pinned: true,
+    },
+    {
+      key: 'taggedWith',
+      label: 'Tagged with',
+      filter: (
+        <TextField
+          label="Tagged with"
+          value={taggedWith}
+          onChange={handleTaggedWithChange}
+          autoComplete="off"
+          labelHidden
+        />
+      ),
+      shortcut: true,
+      pinned: true,
+    },
+    {
+      key: 'moneySpent',
+      label: 'Money spent',
+      filter: (
+        <RangeSlider
+          label="Money spent is between"
+          labelHidden
+          value={moneySpent || [0, 500]}
+          prefix="$"
+          output
+          min={0}
+          max={2000}
+          step={1}
+          onChange={handleMoneySpentChange}
+        />
+      ),
+      shortcut: true,
+      pinned: true,
+    },
+  ];
+
+  const appliedFilters: FiltersProps['appliedFilters'] = [];
+  if (!isEmpty(accountStatus)) {
+    const key = 'accountStatus';
+    appliedFilters.push({
+      key,
+      label: disambiguateLabel(key, accountStatus),
+      onRemove: handleAccountStatusRemove,
+    });
+  }
+  if (!isEmpty(moneySpent)) {
+    const key = 'moneySpent';
+    appliedFilters.push({
+      key,
+      label: disambiguateLabel(key, moneySpent),
+      onRemove: handleMoneySpentRemove,
+    });
+  }
+  if (!isEmpty(taggedWith)) {
+    const key = 'taggedWith';
+    appliedFilters.push({
+      key,
+      label: disambiguateLabel(key, taggedWith),
+      onRemove: handleTaggedWithRemove,
+    });
+  }
+
+  return (
+    <div style={{height: '568px'}}>
+      <LegacyCard>
+        <ResourceList
+          resourceName={{singular: 'customer', plural: 'customers'}}
+          filterControl={
+            <Filters
+              queryValue={queryValue}
+              queryPlaceholder="Searching in all"
+              filters={filters}
+              appliedFilters={appliedFilters}
+              onQueryChange={handleFiltersQueryChange}
+              onQueryClear={handleQueryValueRemove}
+              onClearAll={handleFiltersClearAll}
+            />
+          }
+          flushFilters
+          items={[
+            {
+              id: '341',
+              url: '#',
+              name: 'Mae Jemison',
+              location: 'Decatur, USA',
+            },
+            {
+              id: '256',
+              url: '#',
+              name: 'Ellen Ochoa',
+              location: 'Los Angeles, USA',
+            },
+          ]}
+          renderItem={(item) => {
+            const {id, url, name, location} = item;
+            const media = <Avatar customer size="md" name={name} />;
+
+            return (
+              <ResourceList.Item
+                id={id}
+                url={url}
+                media={media}
+                accessibilityLabel={`View details for ${name}`}
+              >
+                <Text as="h3" fontWeight="bold">
+                  {name}
+                </Text>
+                <div>{location}</div>
+              </ResourceList.Item>
+            );
+          }}
+        />
+      </LegacyCard>
+    </div>
+  );
+
+  function disambiguateLabel(key, value) {
+    switch (key) {
+      case 'moneySpent':
+        return `Money spent is between $${value[0]} and $${value[1]}`;
+      case 'taggedWith':
+        return `Tagged with ${value}`;
+      case 'accountStatus':
+        return value.map((val) => `Customer ${val}`).join(', ');
+      default:
+        return value;
+    }
+  }
+
+  function isEmpty(value) {
+    if (Array.isArray(value)) {
+      return value.length === 0;
+    } else {
+      return value === '' || value == null;
+    }
+  }
+}
diff --git a/polaris-react/src/components/Filters/components/FiltersBar/FiltersBar.tsx b/polaris-react/src/components/Filters/components/FiltersBar/FiltersBar.tsx
index 019b6eb7299..489c14a9278 100644
--- a/polaris-react/src/components/Filters/components/FiltersBar/FiltersBar.tsx
+++ b/polaris-react/src/components/Filters/components/FiltersBar/FiltersBar.tsx
@@ -78,6 +78,10 @@ export function FiltersBar({
   };
   const appliedFilterKeys = appliedFilters?.map(({key}) => key);
 
+  const pinnedFromPropsKeys = filters
+    .filter(({pinned}) => pinned)
+    .map(({key}) => key);
+
   const pinnedFiltersFromPropsAndAppliedFilters = filters.filter(
     ({pinned, key}) => {
       const isPinnedOrApplied =
@@ -182,17 +186,23 @@ export function FiltersBar({
   );
 
   const handleClearAllFilters = () => {
-    setLocalPinnedFilters([]);
+    setLocalPinnedFilters(pinnedFromPropsKeys);
     onClearAll?.();
   };
-  const shouldShowAddButton = filters.some((filter) => !filter.pinned);
+  const shouldShowAddButton =
+    filters.some((filter) => !filter.pinned) ||
+    filters.length !== localPinnedFilters.length;
 
   const pinnedFiltersMarkup = pinnedFilters.map(
     ({key: filterKey, ...pinnedFilter}) => {
       const appliedFilter = appliedFilters?.find(({key}) => key === filterKey);
       const handleFilterPillRemove = () => {
         setLocalPinnedFilters((currentLocalPinnedFilters) =>
-          currentLocalPinnedFilters.filter((key) => key !== filterKey),
+          currentLocalPinnedFilters.filter((key) => {
+            const isMatchedFilters = key === filterKey;
+            const isPinnedFilterFromProps = pinnedFromPropsKeys.includes(key);
+            return !isMatchedFilters || isPinnedFilterFromProps;
+          }),
         );
         appliedFilter?.onRemove(filterKey);
       };
@@ -236,26 +246,25 @@ export function FiltersBar({
     </div>
   ) : null;
 
-  const clearAllMarkup =
-    appliedFilters?.length || localPinnedFilters.length ? (
-      <div
-        className={classNames(
-          styles.ClearAll,
-          hasOneOrMorePinnedFilters &&
-            shouldShowAddButton &&
-            styles.MultiplePinnedFilterClearAll,
-        )}
+  const clearAllMarkup = appliedFilters?.length ? (
+    <div
+      className={classNames(
+        styles.ClearAll,
+        hasOneOrMorePinnedFilters &&
+          shouldShowAddButton &&
+          styles.MultiplePinnedFilterClearAll,
+      )}
+    >
+      <Button
+        size="micro"
+        onClick={handleClearAllFilters}
+        removeUnderline
+        variant="monochromePlain"
       >
-        <Button
-          size="micro"
-          onClick={handleClearAllFilters}
-          removeUnderline
-          variant="monochromePlain"
-        >
-          {i18n.translate('Polaris.Filters.clearFilters')}
-        </Button>
-      </div>
-    ) : null;
+        {i18n.translate('Polaris.Filters.clearFilters')}
+      </Button>
+    </div>
+  ) : null;
 
   return (
     <div
diff --git a/polaris-react/src/components/Filters/components/FiltersBar/tests/FiltersBar.test.tsx b/polaris-react/src/components/Filters/components/FiltersBar/tests/FiltersBar.test.tsx
index 403f831902e..b2b4f2229af 100644
--- a/polaris-react/src/components/Filters/components/FiltersBar/tests/FiltersBar.test.tsx
+++ b/polaris-react/src/components/Filters/components/FiltersBar/tests/FiltersBar.test.tsx
@@ -6,6 +6,7 @@ import {ActionList} from '../../../../ActionList';
 import {FiltersBar} from '../FiltersBar';
 import type {FiltersBarProps} from '../FiltersBar';
 import {FilterPill} from '../../FilterPill';
+import {Button} from '../../../../Button';
 
 describe('<FiltersBar />', () => {
   let originalScroll: any;
@@ -388,4 +389,58 @@ describe('<FiltersBar />', () => {
       ],
     });
   });
+
+  it('will keep a pinned filter from props pinned when clearing', () => {
+    const appliedFilters = [
+      {
+        ...defaultProps.filters[1],
+        label: 'Bar 2',
+        value: ['Bar 2'],
+        onRemove: jest.fn(),
+      },
+    ];
+    const scrollSpy = jest.fn();
+    HTMLElement.prototype.scroll = scrollSpy;
+    const wrapper = mountWithApp(
+      <FiltersBar {...defaultProps} appliedFilters={appliedFilters} />,
+    );
+
+    wrapper
+      .find(FilterPill, {
+        label: 'Bar 2',
+      })!
+      .trigger('onRemove');
+
+    expect(wrapper).toContainReactComponentTimes(FilterPill, 1);
+  });
+
+  it('will keep a pinned filter from props pinned when clearing all', () => {
+    const appliedFilters = [
+      {
+        ...defaultProps.filters[0],
+        label: 'Bar 2',
+        value: ['Bar 2'],
+        onRemove: jest.fn(),
+      },
+      {
+        ...defaultProps.filters[2],
+        label: 'Bar 2',
+        value: ['Bar 2'],
+        onRemove: jest.fn(),
+      },
+    ];
+    const scrollSpy = jest.fn();
+    HTMLElement.prototype.scroll = scrollSpy;
+    const wrapper = mountWithApp(
+      <FiltersBar {...defaultProps} appliedFilters={appliedFilters} />,
+    );
+
+    wrapper
+      .find(Button, {
+        children: 'Clear all',
+      })!
+      .trigger('onClick');
+
+    expect(wrapper).toContainReactComponentTimes(FilterPill, 1);
+  });
 });