An R package for CNV-based association studies
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README.md

CoNVaQ

An R package for CNV-based association studies.

CoNVaQ provides two models:

  • A standard statistical association model using Fisher's exact test.
  • A query-based model, finding CNV regions matching user-specified predicates.

CoNVaQ is also available as an online platform at https://convaq.compbio.sdu.dk.

Installation

You can install the latest version using devtools with:

devtools::install_github("SimonLarsen/convaq@*release")

License

CoNVaQ is licensed under an MIT license. See the LICENSE file for details.

Citation

If you use CoNVaQ in your research, we kindly ask you to cite the following publication:

Simon Jonas Larsen, Luisa Matos do Canto, Silvia Regina Rogatto, Jan Baumbach (2018). CoNVaQ: a web tool for copy number variation-based association studies BMC Genomics, 19(1), 369. DOI: https://doi.org/10.1186/s12864-018-4732-8.