GitHub - SleightLab/Lelliptica_bulkRNAseq

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Name		Name	Last commit message	Last commit date
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README.txt		README.txt
WGCNA_analysis_v2.1_merge_modules.R		WGCNA_analysis_v2.1_merge_modules.R
edgeR_script_pairwise_comparisons_DGE.R		edgeR_script_pairwise_comparisons_DGE.R

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Instructions:

Download data matricies from biostudies: https://www.ebi.ac.uk/biostudies/studies/S-BSST926

Download scripts from github

Run edgeR_script_pairwise_comparisons_DGE.R to conduct DGE analysis

Run WGCNA_analysis_v2.1_merge_modules.R to conduct WGCNA analysis - note high performance computer likely required