From b6b114beac57cea865d93f68452ac905016e7e9a Mon Sep 17 00:00:00 2001 From: SamBrenny <149430551+SamBrenny@users.noreply.github.com> Date: Wed, 1 Nov 2023 15:17:07 -0500 Subject: [PATCH 1/4] Add mp2rageBackgroundSuppression.s4ext --- mp2rageBackgroundSuppression.s4ext | 44 ++++++++++++++++++++++++++++++ 1 file changed, 44 insertions(+) create mode 100644 mp2rageBackgroundSuppression.s4ext diff --git a/mp2rageBackgroundSuppression.s4ext b/mp2rageBackgroundSuppression.s4ext new file mode 100644 index 000000000..29ffdc1c9 --- /dev/null +++ b/mp2rageBackgroundSuppression.s4ext @@ -0,0 +1,44 @@ +# +# First token of each non-comment line is the keyword and the rest of the line +# (including spaces) is the value. +# - the value can be blank +# + +# This is source code manager +scm git +scmurl https://github.com/harellab/SlicerMp2rageBackgroundSuppression +scmrevision trunk + +# list dependencies +# - These should be names of other modules that have .s4ext files +# - The dependencies will be built first +depends NA + +# Inner build directory (default is ".") +build_subdirectory . + +# homepage +homepage https://github.com/harellab/SlicerMp2rageBackgroundSuppression + +# Firstname1 Lastname1 ([SubOrg1, ]Org1), Firstname2 Lastname2 ([SubOrg2, ]Org2) +# For example: Jane Roe (Superware), John Doe (Lab1, Nowhere), Joe Bloggs (Noware) +contributors Henry Braun (UMN CMRR), Sam Brenny (UMN CMRR) + +# Match category in the xml description of the module (where it shows up in Modules menu) +category Filtering + +# url to icon (png, size 128x128 pixels) +iconurl https://github.com/harellab/SlicerMp2rageBackgroundSuppression/blob/trunk/BackgroundNoiseSuppression.png?raw=true + +# Give people an idea what to expect from this code +# - Is it just a test or something you stand behind? +status + +# One line stating what the module does +description This extension provides background noise filtering for MP2RAGE acquisition + +# Space separated list of urls +screenshoturls https://github.com/harellab/SlicerMp2rageBackgroundSuppression/blob/trunk/Screenshot1.png https://github.com/harellab/SlicerMp2rageBackgroundSuppression/blob/trunk/Screenshot2.png + +# 0 or 1: Define if the extension should be enabled after its installation. +enabled 1 \ No newline at end of file From 89e5dbd07eff319b71d3f4a50de7a091b64a3218 Mon Sep 17 00:00:00 2001 From: SamBrenny <149430551+SamBrenny@users.noreply.github.com> Date: Fri, 17 Nov 2023 14:13:29 -0600 Subject: [PATCH 2/4] Update mp2rageBackgroundSuppression.s4ext Added blank line to end of file --- mp2rageBackgroundSuppression.s4ext | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/mp2rageBackgroundSuppression.s4ext b/mp2rageBackgroundSuppression.s4ext index 29ffdc1c9..827e5be09 100644 --- a/mp2rageBackgroundSuppression.s4ext +++ b/mp2rageBackgroundSuppression.s4ext @@ -41,4 +41,4 @@ description This extension provides background noise filtering for MP2RAGE acqui screenshoturls https://github.com/harellab/SlicerMp2rageBackgroundSuppression/blob/trunk/Screenshot1.png https://github.com/harellab/SlicerMp2rageBackgroundSuppression/blob/trunk/Screenshot2.png # 0 or 1: Define if the extension should be enabled after its installation. -enabled 1 \ No newline at end of file +enabled 1 From c1330b42dac8a1ca98a5f6421399c2a10bf83080 Mon Sep 17 00:00:00 2001 From: SamBrenny <149430551+SamBrenny@users.noreply.github.com> Date: Tue, 21 Nov 2023 14:20:56 -0600 Subject: [PATCH 3/4] Update and rename mp2rageBackgroundSuppression.s4ext to MP2RAGE.s4ext Changed the Slicer Extension name to MP2RAGE and updated links. --- mp2rageBackgroundSuppression.s4ext => MP2RAGE.s4ext | 13 ++++++------- 1 file changed, 6 insertions(+), 7 deletions(-) rename mp2rageBackgroundSuppression.s4ext => MP2RAGE.s4ext (66%) diff --git a/mp2rageBackgroundSuppression.s4ext b/MP2RAGE.s4ext similarity index 66% rename from mp2rageBackgroundSuppression.s4ext rename to MP2RAGE.s4ext index 827e5be09..65bb0a2bb 100644 --- a/mp2rageBackgroundSuppression.s4ext +++ b/MP2RAGE.s4ext @@ -6,7 +6,7 @@ # This is source code manager scm git -scmurl https://github.com/harellab/SlicerMp2rageBackgroundSuppression +scmurl https://github.com/harellab/SlicerMP2RAGE scmrevision trunk # list dependencies @@ -18,27 +18,26 @@ depends NA build_subdirectory . # homepage -homepage https://github.com/harellab/SlicerMp2rageBackgroundSuppression +homepage https://github.com/harellab/SlicerMP2RAGE # Firstname1 Lastname1 ([SubOrg1, ]Org1), Firstname2 Lastname2 ([SubOrg2, ]Org2) # For example: Jane Roe (Superware), John Doe (Lab1, Nowhere), Joe Bloggs (Noware) -contributors Henry Braun (UMN CMRR), Sam Brenny (UMN CMRR) +contributors Henry Braun (CMRR, UMN), Sam Brenny (CMRR, UMN) # Match category in the xml description of the module (where it shows up in Modules menu) category Filtering # url to icon (png, size 128x128 pixels) -iconurl https://github.com/harellab/SlicerMp2rageBackgroundSuppression/blob/trunk/BackgroundNoiseSuppression.png?raw=true - +iconurl https://github.com/harellab/SlicerMP2RAGE/blob/trunk/ExtensionIcon.png?raw=true # Give people an idea what to expect from this code # - Is it just a test or something you stand behind? status # One line stating what the module does -description This extension provides background noise filtering for MP2RAGE acquisition +description This extension provides background noise filtering for MP2RAGE acquisition. # Space separated list of urls -screenshoturls https://github.com/harellab/SlicerMp2rageBackgroundSuppression/blob/trunk/Screenshot1.png https://github.com/harellab/SlicerMp2rageBackgroundSuppression/blob/trunk/Screenshot2.png +screenshoturls https://github.com/harellab/SlicerMP2RAGE/blob/trunk/Screenshot1.png?raw=true https://github.com/harellab/SlicerMP2RAGE/blob/trunk/Screenshot2.png?raw=true # 0 or 1: Define if the extension should be enabled after its installation. enabled 1 From ad6737febbe01f391d822b9503de3d1499b4b2af Mon Sep 17 00:00:00 2001 From: Sam Brenny Date: Fri, 8 Mar 2024 15:37:19 -0600 Subject: [PATCH 4/4] Name changed to UHFMRTools --- MP2RAGE.s4ext => UHFMRTools.s4ext | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) rename MP2RAGE.s4ext => UHFMRTools.s4ext (59%) diff --git a/MP2RAGE.s4ext b/UHFMRTools.s4ext similarity index 59% rename from MP2RAGE.s4ext rename to UHFMRTools.s4ext index 65bb0a2bb..117124494 100644 --- a/MP2RAGE.s4ext +++ b/UHFMRTools.s4ext @@ -6,7 +6,7 @@ # This is source code manager scm git -scmurl https://github.com/harellab/SlicerMP2RAGE +scmurl https://github.com/harellab/SlicerUHFMRTools scmrevision trunk # list dependencies @@ -18,7 +18,7 @@ depends NA build_subdirectory . # homepage -homepage https://github.com/harellab/SlicerMP2RAGE +homepage https://github.com/harellab/SlicerUHFMRTools # Firstname1 Lastname1 ([SubOrg1, ]Org1), Firstname2 Lastname2 ([SubOrg2, ]Org2) # For example: Jane Roe (Superware), John Doe (Lab1, Nowhere), Joe Bloggs (Noware) @@ -28,16 +28,17 @@ contributors Henry Braun (CMRR, UMN), Sam Brenny (CMRR, UMN) category Filtering # url to icon (png, size 128x128 pixels) -iconurl https://github.com/harellab/SlicerMP2RAGE/blob/trunk/ExtensionIcon.png?raw=true +iconurl https://github.com/harellab/SlicerUHFMRTools/blob/trunk/ExtensionIcon.png?raw=true # Give people an idea what to expect from this code # - Is it just a test or something you stand behind? status # One line stating what the module does -description This extension provides background noise filtering for MP2RAGE acquisition. +description This extension provides tools for working with ultra-high field (UHF) MRI images and is intended to provide post-acquisition processing. # Space separated list of urls -screenshoturls https://github.com/harellab/SlicerMP2RAGE/blob/trunk/Screenshot1.png?raw=true https://github.com/harellab/SlicerMP2RAGE/blob/trunk/Screenshot2.png?raw=true +screenshoturls https://github.com/harellab/SlicerUHFMRTools/blob/trunk/doc/AdditionalModulePaths.png?raw=true https://github.com/harellab/SlicerUHFMRTools/blob/trunk/doc/FavoriteModules.png?raw=true https://github.com/harellab/SlicerUHFMRTools/blob/trunk/doc/ModuleWorkflow.png?raw=true https://github.com/harellab/SlicerUHFMRTools/blob/trunk/doc/ModuleResult.png?raw=true # 0 or 1: Define if the extension should be enabled after its installation. enabled 1 +