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Commits on Oct 31, 2012
  1. ENH: Slicer 4.2.0

    jcfr committed Oct 31, 2012
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21298 3bd1e089-480b-0410-8dfb-8563597acbee
  2. BUG: Extension manager dialog default size is based on Slicer applica…

    jcfr committed Oct 31, 2012
    …tion size
    
    See http://www.na-mic.org/Bug/view.php?id=2331
    
    Partial fixes for #2331
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21297 3bd1e089-480b-0410-8dfb-8563597acbee
  3. BUG: reduced tolerance for test. restructured to percentage not absolute

    millerjv committed Oct 31, 2012
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21296 3bd1e089-480b-0410-8dfb-8563597acbee
  4. COMP: Add sanity check preventing building from source or build direc…

    jcfr committed Oct 31, 2012
    …tory with spaces
    
    If needed, this check can be by-passed passing option
    -DSlicer_SKIP_DIR_WITH_SPACES_CHECK:BOOL=TRUE
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21295 3bd1e089-480b-0410-8dfb-8563597acbee
  5. STYLE: avoid DeprecationWarning messages from vtk wrapping

    pieper committed Oct 31, 2012
    When passing a float to a vtk method that expects int, a
    DeprecationWarning is issued, but it does not provide any
    diagnositic information about the method or class that caused
    the issue. To get the information, you need to issue the following
    python commands before the warning is triggered:
    
     import warnings
     warnings.simplefilter('error')
    
    This generates a stack trace that can be used to find the issue.
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21294 3bd1e089-480b-0410-8dfb-8563597acbee
  6. BUG: fix for SlicerRT Issue #153 (hang when dicom plugins fail)

    pieper committed Oct 31, 2012
    A python error in a dicom plugin (e.g. an extension like rt or pet/ct)
    could cause the dicom module to be unresponsive.  Now there is a warning
    dialog with the name of the failing plugin.
    
    https://www.assembla.com/spaces/slicerrt/tickets/153#/activity/ticket:
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21293 3bd1e089-480b-0410-8dfb-8563597acbee
  7. COMP: Revert commit r21281 integrated by error

    jcfr committed Oct 31, 2012
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21292 3bd1e089-480b-0410-8dfb-8563597acbee
  8. BUG: addnode not needed after initialize, see #2622

    fedorov committed Oct 31, 2012
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21291 3bd1e089-480b-0410-8dfb-8563597acbee
  9. BUG 2710. Fixed SceneViewStorage node's filename for MRB file.

    alexy committed Oct 31, 2012
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21290 3bd1e089-480b-0410-8dfb-8563597acbee
Commits on Oct 30, 2012
  1. BUG 2710. Set root directory in the scene view nodes when saving .MRB…

    alexy committed Oct 30, 2012
    … files.
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21289 3bd1e089-480b-0410-8dfb-8563597acbee
  2. BUG 2707. If the scene root directory does not exist set it to curren…

    alexy committed Oct 30, 2012
    …t dir.
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21288 3bd1e089-480b-0410-8dfb-8563597acbee
  3. BUG: Delete display nodes returned from CreateXXX() functions

    finetjul committed Oct 30, 2012
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21287 3bd1e089-480b-0410-8dfb-8563597acbee
  4. BUG: issue #2513 updated mrb from Marianna: fixed label map, scene vi…

    naucoin committed Oct 30, 2012
    …ew camera angles/slice visib
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21286 3bd1e089-480b-0410-8dfb-8563597acbee
  5. BUG: Restore and fix commits r21277 and r21278 with invalid VTK exter…

    finetjul committed Oct 30, 2012
    …nal project reference
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21285 3bd1e089-480b-0410-8dfb-8563597acbee
  6. COMP: Revert commits r21282 and r21283 due to invalid VTK external pr…

    jcfr committed Oct 30, 2012
    …oject reference
    
    Obtained the following message:
    
     "fatal: reference is not a tree: 9355f2d8b2d8c62a4e352176832576a3a0ecd37d
     CMake Error at VTK-prefix/tmp/VTK-gitclone.cmake:28 (message):
       Failed to checkout tag: '9355f2d8b2d8c62a4e352176832576a3a0ecd37d'"
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21284 3bd1e089-480b-0410-8dfb-8563597acbee
  7. BUG: Restore and fix commit r21278 with invalid CTK external project …

    finetjul committed Oct 30, 2012
    …reference
    
    This reverts commit r21279
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21283 3bd1e089-480b-0410-8dfb-8563597acbee
  8. BUG: Restore and fix commit r21277 with invalid CTK external project …

    finetjul committed Oct 30, 2012
    …reference
    
    This reverts commit r21289
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21282 3bd1e089-480b-0410-8dfb-8563597acbee
  9. COMP: Update external project "*.cmake.in" files to support path with…

    jcfr committed Oct 30, 2012
    … spaces
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21281 3bd1e089-480b-0410-8dfb-8563597acbee
  10. COMP: Revert commit r21277 due to invalid CTK external project reference

    jcfr committed Oct 30, 2012
    This reverts commit 011e6d4.
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21280 3bd1e089-480b-0410-8dfb-8563597acbee
  11. COMP: Revert commit r21278 due to invalid CTK external project reference

    jcfr committed Oct 30, 2012
    This reverts commit 6e89f69.
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21279 3bd1e089-480b-0410-8dfb-8563597acbee
  12. ENH: Speed up VR module initialization

    finetjul committed Oct 30, 2012
    When having a color node with a lot of colors > 1000, deep copying
    vtkPiecewiseFunction fires lots of Modified events that are propagated by
    the volume property node. This significantly slows down the
    initialization of the volume rendering module (20secs in release mode).
    The core problem is that a modified volume property node triggers
    unnecessary updates. But it will be fixed later on.
    
    Issue #2642 (0006854)
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21278 3bd1e089-480b-0410-8dfb-8563597acbee
  13. BUG: Volume rendering now support labelmaps with more than 1024 colors

    finetjul committed Oct 30, 2012
    Closes #2165, #2527
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21277 3bd1e089-480b-0410-8dfb-8563597acbee
Commits on Oct 29, 2012
  1. BUG: Make sure terminal output associated with generic test is enabled

    jcfr committed Oct 29, 2012
    When building Slicer without Slicer_BUILD_WIN32_CONSOLE enabled, terminal outputs
    are disabled and ctkErrorLogFDMessageHandler is not registered.
    See http://slicer.cdash.org/testDetails.php?test=3076851&build=45360
    
    This will have to be revisited since ctkErrorLogFDMessageHandler should
    also be registered. Given the fact Slicer 4.2 will be released very soon,
    qSlicerCoreApplication won't be changed.
    
    See http://www.na-mic.org/Bug/view.php?id=2349
    
    Fixes #2349
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21276 3bd1e089-480b-0410-8dfb-8563597acbee
  2. BUG: issue #2700 update doxygen comments to make use of ROI node more…

    naucoin committed Oct 29, 2012
    … clear
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21275 3bd1e089-480b-0410-8dfb-8563597acbee
  3. BUG: fixed inability to toggle ROI visibility in Step2

    fedorov committed Oct 29, 2012
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21274 3bd1e089-480b-0410-8dfb-8563597acbee
  4. BUG: Switch to OpenIGTLinkIF r8018 that fixes memory leak issue (0002…

    tokuda committed Oct 29, 2012
    …431)
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21273 3bd1e089-480b-0410-8dfb-8563597acbee
  5. BUG: Display message when sample data download fails

    jcfr committed Oct 29, 2012
    See http://www.na-mic.org/Bug/view.php?id=1226
    
    Fixes #1226
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21272 3bd1e089-480b-0410-8dfb-8563597acbee
  6. BUG: resolves issues 2588, 2590

    fedorov committed Oct 29, 2012
    The patch was contributed by JC
    
    the memory leaks and the crash were due to duplicate referencing of the
    workflow from the widget and from the workflow steps, see
    fedorov/ChangeTrackerPy@2edc1c4
    
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21271 3bd1e089-480b-0410-8dfb-8563597acbee
  7. STYLE: improve indentation of GrowCut code

    pieper committed Oct 29, 2012
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21270 3bd1e089-480b-0410-8dfb-8563597acbee
  8. BUG: Return appropriate type in case of error in vtkMRMLCommandLineMo…

    jcfr committed Oct 29, 2012
    …duleNode::GetParameter methods
    
    Note that vtkMRMLCommandLineModuleNode test should also be added. This is
    captured by issue #2699
    
    See http://www.na-mic.org/Bug/view.php?id=2600
    
    Fixes #2600
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21269 3bd1e089-480b-0410-8dfb-8563597acbee
Commits on Oct 28, 2012
Commits on Oct 27, 2012
  1. COMP: Consider executable suffix when setting Slicer_LAUNCHER_EXECUTABLE

    jcfr committed Oct 27, 2012
    Fix EMSegment tests failing on windows with the following error message:
    
      "error: Failed to obtain launcher executable name !"
    
    The concerned tests are:
      EMSegCL_RunDefaultNodes
      EMSegCL_RunSetEverything
      EMSeg_MRML_DiffDefaultNodes
      EMSeg_MRML_DiffReadWriteNodes
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21267 3bd1e089-480b-0410-8dfb-8563597acbee
  2. BUG: Ensure vtkMRMLAnnotationDisplayableManager can be instantiated b…

    jcfr committed Oct 27, 2012
    …y name
    
    This will fix vtkMRMLAnnotationDisplayableManagerTest1. Indeed, this test
    attempt to instantiate the base vtkMRMLAnnotationDisplayableManager.
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21266 3bd1e089-480b-0410-8dfb-8563597acbee
  3. COMP: Update qMRMLVolumeThresholdWidgetEventTranslatorPlayerTest1

    jcfr committed Oct 27, 2012
    Following r21103, the widget UI has been re-organized. A new XML files has
    been generated to accommodate this change. Note that no check is done
    on the final value obtained after replaying the XML file.
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21265 3bd1e089-480b-0410-8dfb-8563597acbee
  4. BUG 2656. Create line/tube/glyph FiberBundleDisplayNode while adding …

    alexy committed Oct 27, 2012
    …a FiberBundleNode
    
    git-svn-id: http://svn.slicer.org/Slicer4/trunk@21264 3bd1e089-480b-0410-8dfb-8563597acbee