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What is SmartRoot?

SmartRoot is a semi-automated image analysis software which streamlines the quantification of root growth and architecture for complex root systems.

The software combines a vectorial representation of root objects with a powerful tracing algorithm which accommodates to a wide range of image source and quality.

The software supports a sampling-based analysis of root system images, in which detailed information is collected on a limited number of roots selected by the user according to specific research requirements.

SmartRoot is an operating system independent freeware based on ImageJ and uses cross-platform standards (XML, SQL, Java) for communication with data analysis softwares.

SmartRoot is :

  • Semi-automated
  • Platform-independent (Windows, Mac OSX, Linux)
  • Free

SmartRoot works with:

  • Wide range of image type and quality
  • All plant species
  • Mature root systems
  • Time-series

Built in tools :

  • Actions on several traced roots
  • Basic plot generator
  • SQL database export
  • CSV export
  • Various types of root annotations

Measured traits:

  • Root length
  • Root diameter
  • Root insertion angle
  • Lateral density
  • Growth
  • Topology

About

Source files for the SmartRoot software. Website: https://smartroot.github.io/

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