SPUN Fungal Richness maps

This repository contains code and data to reproduce the Arbuscular Mycorrhizal (AM) and Ectomycorrhizal (ECM) richness maps from Van Nuland et al. 202x doi: 10.xxx.xxx

Rarefaction

AM and ECM rarefied richness are obtained from GlobalFungi. Richness values are rarefied using the R package iNEXT. Code and data to reproduce this are found in the folder xxx

Geospatial modeling

The geospatial modeling approach is divided in several parts, with the respecitve scripts numbered accordingly.

1. Covariate sampling. Here, we extract per-pixel environmental covariate data.
2. Data filtering. Removing outliers per biome.
3. One-hot encoding. Transforming the project-specific variables from multilevel categorical to binary format.
4. Modeling pipeline. The actual modeling approach.