From 0a4a7397e4e4aa3587aaa2ff095ad3ce3107b255 Mon Sep 17 00:00:00 2001 From: Martin Vanbrabant Date: Fri, 2 May 2025 17:59:44 +0200 Subject: [PATCH 1/6] Comunica version bump from 3.2.3 to 4.2.0 --- main/package-lock.json | 11475 +++++++++++++--- main/package.json | 2 +- .../TemplatedListResultTable.jsx | 4 +- main/src/dataProvider/SparqlDataProvider.js | 65 +- .../indirect-variables-different-types.cy.js | 16 +- 5 files changed, 9335 insertions(+), 2227 deletions(-) diff --git a/main/package-lock.json b/main/package-lock.json index 4fbacf0..ec0010f 100644 --- a/main/package-lock.json +++ b/main/package-lock.json @@ -8,7 +8,7 @@ "name": "miravi-a-linked-data-viewer", "version": "1.0.0", "dependencies": { - "@comunica/query-sparql": "^3.2.3", + "@comunica/query-sparql": "^4.2.0", "@inrupt/solid-client": "^1.30.0", "@inrupt/solid-client-authn-browser": "^1.17.1", "@inrupt/vocab-common-rdf": "^1.0.5", @@ -395,3103 +395,9906 @@ "sparqlalgebrajs": "^4.3.7" } }, - 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@@ -7809,7 +14915,6 @@ "version": "0.1.4", "resolved": "https://registry.npmjs.org/imurmurhash/-/imurmurhash-0.1.4.tgz", "integrity": "sha512-JmXMZ6wuvDmLiHEml9ykzqO6lwFbof0GG4IkcGaENdCRDDmMVnny7s5HsIgHCbaq0w2MyPhDqkhTUgS2LU2PHA==", - "dev": true, "license": "MIT", "engines": { "node": ">=0.8.19" diff --git a/main/package.json b/main/package.json index ac28f89..f4e0e6b 100644 --- a/main/package.json +++ b/main/package.json @@ -13,7 +13,7 @@ "dev-with-path": "vite --base /random/path/" }, "dependencies": { - "@comunica/query-sparql": "^3.2.3", + "@comunica/query-sparql": "^4.2.0", "@inrupt/solid-client": "^1.30.0", "@inrupt/solid-client-authn-browser": "^1.17.1", "@inrupt/vocab-common-rdf": "^1.0.5", diff --git a/main/src/components/ListResultTable/TemplatedListResultTable.jsx b/main/src/components/ListResultTable/TemplatedListResultTable.jsx index 599db30..c75706a 100644 --- a/main/src/components/ListResultTable/TemplatedListResultTable.jsx +++ b/main/src/components/ListResultTable/TemplatedListResultTable.jsx @@ -45,8 +45,10 @@ const TemplatedListResultTable = (props) => { if (query.variables || query.indirectVariables) { try { // LOG console.log('start waiting for variable options'); + // LOG const t1 = Date.now(); setVariableOptions(await dataProvider.getVariableOptions(query)); - // LOG console.log('done waiting for variable options'); + // LOG const t2 = Date.now(); + // LOG console.log(`done waiting for variable options after ${t2-t1} ms`); setWaitingForVariableOptions(false); } catch (error) { // LOG console.log(`error getting variable options: ${error.message}`); diff --git a/main/src/dataProvider/SparqlDataProvider.js b/main/src/dataProvider/SparqlDataProvider.js index 6fdb34b..f928e82 100644 --- a/main/src/dataProvider/SparqlDataProvider.js +++ b/main/src/dataProvider/SparqlDataProvider.js @@ -58,6 +58,7 @@ export default { results = listCache.results; } else { if (query.comunicaContext?.sources?.length) { + // LOG console.log(`query.queryText: ${ query.queryText }`); results = await executeQuery(query); listCache.hash = hash; listCache.results = results; @@ -336,6 +337,32 @@ function handleComunicaContextCreation(query) { async function getVariableOptions(query) { + function termToSparqlCompatibleString(term) { + switch (term.termType) { + case 'NamedNode': + return `<${term.value}>`; + + case 'Literal': + const escaped = term.value.replace(/"/g, '\\"'); + if (term.language) { + return `"${escaped}"@${term.language}`; + } + if (term.datatype && term.datatype.value !== 'http://www.w3.org/2001/XMLSchema#string') { + return `"${escaped}"^^<${term.datatype.value}>`; + } + return `"${escaped}"`; + + case 'BlankNode': + return `_:${term.value}`; + + case 'Variable': + return `?${term.value}`; + + default: + throw new Error(`Unknown RDF Term type: ${term.termType}`); + } + } + // LOG console.log(`--- getVariableOptions #${++getVariableOptionsCounter}`); // BEGIN duplicated chunk of code (duplicated in order for templated queries with indirect queries having sources from a source index to work correctly) @@ -387,46 +414,16 @@ async function getVariableOptions(query) { const bindingsStream = await comunicaEngineWrapper.queryBindings(queryString, { sources: query.comunicaContext.sources }, query.httpProxies); await new Promise((resolve, reject) => { - bindingsStream.on('data', (bindings) => { + bindingsStream.on('data', (bindings) => { // see https://comunica.dev/docs/query/advanced/bindings/ + // LOG console.log(`bindings: ${bindings.toString()}`); for (const [variable, term] of bindings) { const name = variable.value; if (!variableOptions[name]) { variableOptions[name] = []; } - let variableValue; - switch (term.termType) { - case "Literal": - // escape double quotes - // example: This is a string containing some \"double quotes\" - variableValue = `${term.value.replace(/"/g, '\\"')}`; - // test whether there is a type specifier ^^... - // this code is hacky, because it depends on undocumented term.id - cover it with sufficient test cases! - if (/\"\^\^/.test(term.id)) { - // do not surround with double quotes - // example: 1 - } else { - // surround with double quotes - // example: "This is a string containing some \"double quotes\"" - variableValue = `"${variableValue}"`; - } - // test whether there is a language tag @... - // this code is hacky, because it depends on undocumented term.id - cover it with sufficient test cases! - const lt = /\@(.*)$/.exec(term.id); - if (lt) { - // append language tag - // example: "This is a string in English"@en - variableValue = `${variableValue}@${lt[1]}`; - } - break; - case "NamedNode": - // surround with triangle brackets - // example: - variableValue = `<${term.value}>`; - break; - default: - break; - } + const variableValue = termToSparqlCompatibleString(term); + // LOG console.log(`variableValue: ${variableValue}`); if (variableValue && !variableOptions[name].includes(variableValue)) { variableOptions[name].push(variableValue); } diff --git a/test/cypress/e2e/indirect-variables-different-types.cy.js b/test/cypress/e2e/indirect-variables-different-types.cy.js index 6568bea..49b46e7 100644 --- a/test/cypress/e2e/indirect-variables-different-types.cy.js +++ b/test/cypress/e2e/indirect-variables-different-types.cy.js @@ -1,5 +1,9 @@ describe("Indirect variable query", () => { + function escapeRegex(str) { + return str.replace(/[.*+?^${}()|[\]\\]/g, '\\$&'); + } + it("Indirect with 1 variable (different types)", () => { const testdata = [ @@ -16,23 +20,23 @@ describe("Indirect variable query", () => { out: 'This is a string in English' }, { - in: 'true', + in: '"true"^^', out: 'true' }, { - in: '1', + in: '"1"^^', out: '1' }, { - in: '1.3', + in: '"1.3"^^', out: '1.3' }, { - in: '1.5E6', + in: '"1.5E6"^^', out: '1.5E6' }, { - in: '"This is a string containing some \\\\"double quotes\\\\""', + in: '"This is a string containing some \\"double quotes\\""', out: 'This is a string containing some "double quotes"' } ]; @@ -45,7 +49,7 @@ describe("Indirect variable query", () => { // Fill in the form cy.get('.ra-input-object').click(); // RegExp: to have an exact match - see https://stackoverflow.com/questions/56443963/click-an-exact-match-text-in-cypress - cy.get('li').contains(new RegExp("^" + t.in + "$", "g")).click(); + cy.get('li').contains(new RegExp(`^${escapeRegex(t.in)}$`, "g")).click(); // Comfirm query cy.get('button').contains('Query').click(); From e2ae16f1a5c38cd483b7664481585754638ac588 Mon Sep 17 00:00:00 2001 From: Martin Vanbrabant Date: Sat, 3 May 2025 19:29:23 +0200 Subject: [PATCH 2/6] test future proof --- test/cypress/e2e/indirect-variables-different-types.cy.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/test/cypress/e2e/indirect-variables-different-types.cy.js b/test/cypress/e2e/indirect-variables-different-types.cy.js index 49b46e7..2b16650 100644 --- a/test/cypress/e2e/indirect-variables-different-types.cy.js +++ b/test/cypress/e2e/indirect-variables-different-types.cy.js @@ -49,7 +49,7 @@ describe("Indirect variable query", () => { // Fill in the form cy.get('.ra-input-object').click(); // RegExp: to have an exact match - see https://stackoverflow.com/questions/56443963/click-an-exact-match-text-in-cypress - cy.get('li').contains(new RegExp(`^${escapeRegex(t.in)}$`, "g")).click(); + cy.get('li').contains(new RegExp(`^${escapeRegex(t.in)}$`)).click(); // Comfirm query cy.get('button').contains('Query').click(); From 5c3697f899ce2b60a6c0daecbded4fe9fac97c4f Mon Sep 17 00:00:00 2001 From: Martin Vanbrabant Date: Tue, 6 May 2025 07:51:11 +0200 Subject: [PATCH 3/6] Changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 69727fa..7a0778e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -19,6 +19,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - configs/oslo-kg: use smaller datasets for queries. - React-admin version updated to 5.7.2 (#207). - Tool renamed to 'Miravi - a linked data viewer'; default favicon.ico and miravi.png provided (#210). +- Bumped Comunica version from 3.2.3 to 4.2.0, resulting in increased execution speed of some queries (#212). ### Fixed From e5941001707ace9f3c3f45927720314e2e3db0e8 Mon Sep 17 00:00:00 2001 From: Martin Vanbrabant Date: Tue, 6 May 2025 07:54:02 +0200 Subject: [PATCH 4/6] ws --- main/src/dataProvider/SparqlDataProvider.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/main/src/dataProvider/SparqlDataProvider.js b/main/src/dataProvider/SparqlDataProvider.js index f928e82..ccec88d 100644 --- a/main/src/dataProvider/SparqlDataProvider.js +++ b/main/src/dataProvider/SparqlDataProvider.js @@ -414,7 +414,7 @@ async function getVariableOptions(query) { const bindingsStream = await comunicaEngineWrapper.queryBindings(queryString, { sources: query.comunicaContext.sources }, query.httpProxies); await new Promise((resolve, reject) => { - bindingsStream.on('data', (bindings) => { + bindingsStream.on('data', (bindings) => { // see https://comunica.dev/docs/query/advanced/bindings/ // LOG console.log(`bindings: ${bindings.toString()}`); for (const [variable, term] of bindings) { From 256f217f097a33b144ee6fdc9e13363a9fef2556 Mon Sep 17 00:00:00 2001 From: Martin Vanbrabant Date: Tue, 6 May 2025 08:14:33 +0200 Subject: [PATCH 5/6] README - variables examples --- README.md | 12 +++++++++--- 1 file changed, 9 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 6c667b9..d74f0f7 100644 --- a/README.md +++ b/README.md @@ -177,9 +177,15 @@ The configuration file must follow the structure shown below. "queryLocation": "Path to the location, relative to 'queryFolder', of the (auxiliary) query that yields the sources from above RDF resource" }, "variables": { - "variableExampleString": ["\"String1\"", "\"String2\""], - "variableExampleUri": ["", ""], - "variableExampleInteger": ["1", "2"] + "variableExampleStrings": ["\"String1\"", "\"String2\""], + "variableExampleUris": ["", ""], + "variableExampleLangStrings": ["\"String1\"@en", "\"Chaîne2\"@fr"], + "variableExampleTypedLiterals": [ + "\"1\"^^", + "\"1.3\"^^", + "\"1.5E6\"^^", + "\"true\"^^" + ] }, "indirectVariables": { "queryLocations": [ From d58d59e7e4b1653fc0bdd6befcec1db7b7a36a4b Mon Sep 17 00:00:00 2001 From: Martin Vanbrabant Date: Tue, 6 May 2025 08:20:31 +0200 Subject: [PATCH 6/6] CHANGELOG --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 7a0778e..663ba10 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -20,6 +20,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - React-admin version updated to 5.7.2 (#207). - Tool renamed to 'Miravi - a linked data viewer'; default favicon.ico and miravi.png provided (#210). - Bumped Comunica version from 3.2.3 to 4.2.0, resulting in increased execution speed of some queries (#212). + Breaking change for typed literals in query configuration, "variables" field; see README for new syntax. ### Fixed