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README.md
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README.md

Gigwa2

Gigwa aims at managing genomic and genotyping data from NGS analyses. It is a tool targeted at users with little computer expertise, providing means to explore visually large amounts of genotyping data by filtering it based not only on variant features including functional annotations, but also on genotypes themselves. It also offers several popular export formats and a density chart visualizer.

Try Gigwa online with public datasets at http://gigwa.southgreen.fr/

v2.0-RELEASE webapp is now available for download on Gigwa homepage: http://southgreen.fr/content/gigwa

Check the wiki:

https://github.com/SouthGreenPlatform/gigwa/wiki

Developer instructions

The source code is available in this repository. It uses Maven for dependency management and requires the following dependencies to be present in your workspace :

https://github.com/SouthGreenPlatform/GenotypeFileManipulation
https://github.com/SouthGreenPlatform/Mgdb2
https://github.com/SouthGreenPlatform/Mgdb2Export
https://github.com/SouthGreenPlatform/role_manager
https://github.com/SouthGreenPlatform/Mgdb2BrapiImpl
https://github.com/SouthGreenPlatform/Gigwa2ServiceInterface
https://github.com/SouthGreenPlatform/Gigwa2ServiceImpl
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