Skip to content
@SpatialTranscriptomicsResearch

SpatialTranscriptomicsResearch

Popular repositories

  1. Forked from jfnavarro/st_pipeline

    ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

    Python 51 28

  2. A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.

    JavaScript 17 7

  3. std-nb Public

    Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018

    C++ 15 2

  4. Forked from jfnavarro/st_viewer

    A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets

    C++ 11 4

  5. Forked from jfnavarro/st_analysis

    A toolkit for visualisation and analysis of Spatial Transcriptomics datasets

    Python 3 5

  6. Poisson regression for Spatial Transcriptomics data as described in Berglund et al. 2018

    C++ 3

Repositories

  • st_spot_detector Public

    A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.

    JavaScript 17 7 2 12 Updated Apr 28, 2022
  • st_spot_detector_singularity Public

    Singularity setup script for the ST Spot detector

    1 3 0 0 Updated Jul 8, 2021
  • st_analysis Public

    A toolkit for visualisation and analysis of Spatial Transcriptomics datasets

    Python 3 MIT 8 0 0 Updated Apr 13, 2021
  • st_viewer Public

    A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets

    C++ 11 12 0 0 Updated Apr 13, 2021
  • st_pipeline Public

    ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

    Python 51 36 6 1 Updated Apr 13, 2021
  • TACA Public

    Tool for the Automation of Cleanup and Analyses

    Python 0 MIT 19 0 0 Updated Dec 27, 2019
  • taggd Public

    Genetic barcode demultiplexing

    Python 1 BSD-3-Clause 6 0 0 Updated May 10, 2019
  • transcriptomoscope Public

    Dimensionality reduction and Voronoi tesselation plotting code for spatial transcriptomics data

    R 0 GPL-3.0 0 0 0 Updated Mar 20, 2019
  • std-nb Public

    Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018

    C++ 15 GPL-3.0 2 0 0 Updated Nov 2, 2018
  • std-poisson Public

    Poisson regression for Spatial Transcriptomics data as described in Berglund et al. 2018

    C++ 3 GPL-3.0 0 0 0 Updated Aug 14, 2018

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…