Species File Group

Repositories

• taxonworks

  Workbench for biodiversity informatics.

  ruby life nomenclature taxonomy evolution collections species
  Ruby 16 43 538 (2 issues need help) 3 Updated Jan 15, 2021

• taxonworks_doc

  TaxonWorks documentation.

  documentation help taxonworks
  Vue 3 11 24 0 Updated Jan 12, 2021

• nomen

  A nomenclatural ontology for names (not concepts).

  nomenclature ontology web-ontology-language taxa biological-entities
  Unlicense 0 7 10 0 Updated Dec 21, 2020

• taxonworks_api

  Documentation for TaxonWorks APIs

  api json taxonworks
  RAML 6 2 16 0 Updated Dec 15, 2020

• hyclas

  Text classification by highlighting

  semantic highlight-text classify-texts
  JavaScript 0 0 4 5 Updated Dec 12, 2020

• taxonworks_rdoc_docker

  Docker environment to serve TaxonWorks RDoc pages
  Ruby 0 0 0 0 Updated Dec 12, 2020

• install_taxonworks

  Instructions for installing and running TaxonWorks

  rails kubernetes install capistrano installation taxonworks
  Ruby 6 2 6 0 Updated Dec 4, 2020

• taxonworks_together_2020

  Agenda, notes, planning, etc. for TaxonWorks Together 2020.
  MIT 0 2 1 0 Updated Nov 29, 2020

• svg-detailer

  A native javascript library for annotating images, with results exportable as SVG elements.

  javascript svg annotator
  JavaScript 0 3 5 5 Updated Nov 25, 2020

• speciesfilegroup.github.io

  Species File Group homepage

  open-source open-science informatics biodiversity
  HTML 0 0 0 0 Updated Nov 20, 2020

• sled

  UI for image segmentation of slide collections
  Vue 0 0 2 2 Updated Nov 20, 2020

• otu_mapping_widget

  Human assisted entity-name matching interface
  Vue 0 2 20 0 Updated Oct 8, 2020

• sqed

  Ruby library for parsing (individual) specimen metada from images.

  metadata images collections
  Ruby 1 0 4 0 Updated Aug 5, 2020

• rubyBHL

  A simple Ruby wrapper to the Biodiversity Heritage Library API.
  Ruby 2 6 0 1 Updated Jul 28, 2020

• taxonifi

  Tools for moving biodiversity-related data around.

  csv parse nomenclature names import biodiversity
  Ruby MIT 1 2 1 0 Updated Feb 21, 2020

• services

  Information about services the Species File Group offers
  0 0 1 0 Updated Feb 19, 2020

• blog

  A Species File Group Blog
  0 0 0 0 Updated Nov 14, 2019

• icons

  Icons for biodiversity informatics software
  0 1 2 0 Updated Apr 11, 2019

• waxy

  Hexagonal SVG from Ruby

  ruby svg dataviz hexagon
  Ruby 0 5 0 0 Updated Apr 4, 2019

• ref2bibtex

  An (almost) single purpose gem wrapping Crossref's API. Pass it a full reference string, get back BibTeX.

  ruby api bibtex doi crossref
  Ruby BSD-3-Clause 1 0 1 0 Updated Mar 5, 2019

• cs_492_fall
  HTML 0 0 5 0 Updated Dec 19, 2018

• matrix_row_coder

  Code phylogenetic/descriptive matrices by row. In Vue.js

  vue-components vuex-store
  JavaScript 0 1 35 0 Updated Aug 28, 2018

• cs_492_spring

  first semester result
  HTML 0 0 1 0 Updated May 5, 2018

• grpc_test

  Throw away repo for CS 492
  HTML 0 1 3 0 Updated Apr 28, 2018

• taxonworks_homepage
  JavaScript 1 1 7 0 Updated Feb 5, 2018

• semanticTextAnnotator

  Endpoint for discussion of shared needs b/w MorphDBase and TaxonWorks
  0 0 21 0 Updated Oct 12, 2017

• logical_query_parser

  Forked from kanety/logical_query_parser

  A parser to generate a tree structure from a logical search query string using treetop.
  Ruby MIT 1 0 0 0 Updated Aug 17, 2017

• bark

  A Ruby Gem wrapper on the Open Tree of Life API.
  Ruby 0 1 0 0 Updated Jun 23, 2017

• symbiotaTaxonWorks

  A repo for spamming ideas about integrating the two efforts.

  taxonworks symbiota
  0 1 9 0 Updated May 10, 2017

• credit_digital_science

  A thought experiment. A semi-currated list for administrators documenting how/why scientific researchers should get credit for their digital contributions.

  productivity science administration citation
  0 0 0 0 Updated Apr 3, 2017