From a891045b24b0d55df2f70a8598554533669bcaeb Mon Sep 17 00:00:00 2001 From: Heberto Mayorquin Date: Wed, 12 Jun 2024 11:20:22 -0600 Subject: [PATCH 1/3] remove upper bound in scipy --- pyproject.toml | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index dadb677056..ea798c31ad 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -65,7 +65,7 @@ extractors = [ "pyedflib>=0.1.30", "sonpy;python_version<'3.10'", "lxml", # lxml for neuroscope - "scipy<1.13", + "scipy", "ONE-api>=2.7.0", # alf sorter and streaming IBL "ibllib>=2.32.5", # streaming IBL "pymatreader>=0.0.32", # For cell explorer matlab files @@ -75,8 +75,6 @@ extractors = [ streaming_extractors = [ "ONE-api>=2.7.0", # alf sorter and streaming IBL "ibllib>=2.32.5", # streaming IBL - "scipy<1.13", # ibl has a dependency on scipy but it does not have an upper bound - # Remove this once https://github.com/int-brain-lab/ibllib/issues/753 # Following dependencies are for streaming with nwb files "pynwb>=2.6.0", "fsspec", From 58cfcc481141bede3c97676f916d2e3dd4b06389 Mon Sep 17 00:00:00 2001 From: Heberto Mayorquin Date: Wed, 12 Jun 2024 11:23:06 -0600 Subject: [PATCH 2/3] update ibllib --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index ea798c31ad..ef7f4bebf0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -74,7 +74,7 @@ extractors = [ streaming_extractors = [ "ONE-api>=2.7.0", # alf sorter and streaming IBL - "ibllib>=2.32.5", # streaming IBL + "ibllib>=2.36.0", # streaming IBL # Following dependencies are for streaming with nwb files "pynwb>=2.6.0", "fsspec", From 609cd34732362f4de92672c0574385d6626bdd31 Mon Sep 17 00:00:00 2001 From: Heberto Mayorquin Date: Thu, 13 Jun 2024 09:46:14 -0600 Subject: [PATCH 3/3] update the other ibl --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index ef7f4bebf0..51528fcc8e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -67,7 +67,7 @@ extractors = [ "lxml", # lxml for neuroscope "scipy", "ONE-api>=2.7.0", # alf sorter and streaming IBL - "ibllib>=2.32.5", # streaming IBL + "ibllib>=2.36.0", # streaming IBL "pymatreader>=0.0.32", # For cell explorer matlab files "zugbruecke>=0.2; sys_platform!='win32'", # For plexon2 ]