usage: ingutil [-h] {upload,status} ...
Upload a VCF file to Ingenuity or check the status of an upload.
positional arguments:
{upload,status}
upload Upload a VCF file to Ingenuity. API key, API secret,
activation code, and shared users are read from a JSON
file.
status Checks the status of an upload.
optional arguments:
-h, --help show this help message and exit
usage: ingutil upload [-h] [-c CONFIG_FILE] [-d DISPLAY_NAME] [-t]
vcf_file sample_name
positional arguments:
vcf_file input VCF file to upload, accepts .vcf or .vcf.gz
sample_name sample name (e.g. case0017)
optional arguments:
-h, --help show this help message and exit
-c CONFIG_FILE, --config_file CONFIG_FILE
configuration file in JSON format (default: conf-
nosharing-noactivation.json)
-d DISPLAY_NAME, --display_name DISPLAY_NAME
Barcode and Display Name in Ingenuity (default: same
as sample name)
-t, --test create metadata files only
usage: ingutil status [-h] [-c CONFIG_FILE] status_url
positional arguments:
status_url the status URL to check
optional arguments:
-h, --help show this help message and exit
-c CONFIG_FILE, --config_file CONFIG_FILE
configuration file in JSON format (default: conf-
nosharing-noactivation.json)
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A command-line utility to upload VCF's using the Ingenuity Datastream API.
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