Merge release 0.7.0 from development #552

nhammond · 2018-08-28T02:30:28Z

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…cs/loom into development

* update release notes for 0.7.0 * fix PyPi test, doc version * update jenkins configuration * correct typo in Jenkinsfile

nhammond added 30 commits November 10, 2017 15:19

roll back untested log cleanup feature

5f72133

fix bug that masked errors in failed docker pull attempts by taskmonitor

3ceb38f

delete cmd for runs, templates, files

e8c0ef2

run deletion handles datanodes, children

81fec87

object deletion from cmdline client

b9b7273

cleanup runs with invalid user_inputs

dcd679c

file export handles metadata

f52acaa

Merge remote-tracking branch 'origin/0.5.3-prerelease' into development

a279667

file import handles metadata

cd9d1c2

track linked files in database

2194299

refactor FileManager into Export/ImportManager

78aaba0

unit tests for loomengine_utils.connection

9eb1d5d

wildcards for google storage, unit tests for file_utils

9ffdc6f

loomengine_utils unittests

20d63c6

template bulk export

1804568

Merge branch 'development' into importexport

23c529f

template cleans up DataNodes on delete

5541d16

migrate template import to utils

4eb73d4

ensure DataNode children are sorted by index

6e9a5f8

Merge branch 'development' into importexport

3091362

import templates with dependencies

b7b6654

bulk-import templates

51ac4e5

bulk-import runs

5081102

attach nested objects on run import

a222a10

finish removing django-mptt

7eb767b

optimize deserialization

51341f5

update template and run export

ac5855f

update loomengine_utils unit tests

ceac5e9

push outputs before setting run status to finished

5485e9e

bugfix GOOGLE_STORAGE_BUCKET setting

997e4f4

nhammond added 28 commits May 23, 2018 22:56

migrate prefetch methods to models

8048df0

Merge remote-tracking branch 'origin/shortlist' into shortlist

edca6fa

preserve relative file path on export/import

9635113

fix unittests

5dab5de

refactor serializers inheritance

57c505b

fix get_data_nodes on task_attempts

0d2ea6d

FilterMixin can lookup multiple references at once

79c4e7f

add filter options back to FileResource

b360536

partial work on RunSerializer

6a31666

partial work on RunSerializer - connect i/o

468f34f

partial work on Runserializer - import

4b43f2a

partial work on RunSerializer - bulk_create DataNodes

91e702f

partial work on RunSerializer - bulk_create DataObjects

3a9a3e4

refactor async tasks

38f1bba

completed RunSerializer refactor

dff3ef8

update unit tests

d257e16

remove "sleep" from delayed TaskAttempt retries

005eb38

Allow delayed save when creating DataNodes

755bdbf

InputCalculator works per run, no more target channel

55d5c11

update requirements

104af94

require requests>=2.5.0 in loom_utils

737b7ce

add pycrypto to dependencies

2f6b25e

Merge branch 'development' of https://github.com/StanfordBioinformati…

452e41e

…cs/loom into development

display Loom version and template md5 in browser (#547)

84356e6

Added documentation on output parser and glob strings (#548)

fdde746

clarify error for duplicate file names in a task (#549)

7cec8ae

"loom server stop" uses internal ip when needed (#550)

9e02752

Prerelease 0.7.0 (#551)

e6181e6

* update release notes for 0.7.0 * fix PyPi test, doc version * update jenkins configuration * correct typo in Jenkinsfile

nhammond changed the title ~~Development~~ Merge release 0.7.0 from development Aug 28, 2018

nhammond merged commit a56926b into master Aug 28, 2018

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Merge release 0.7.0 from development #552

Merge release 0.7.0 from development #552

nhammond commented Aug 28, 2018

Merge release 0.7.0 from development #552

Merge release 0.7.0 from development #552

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nhammond commented Aug 28, 2018