diff --git a/docs/sc/021/sc21.tex b/docs/sc/021/sc21.tex index e09d1dd783d..e2210cd8f53 100644 --- a/docs/sc/021/sc21.tex +++ b/docs/sc/021/sc21.tex @@ -475,8 +475,9 @@ \subsection{\xlabel{using_guide}This Cookbook} \smurf \cite{smurf}, \Kappa \cite{kappa}, \gaia \cite{gaia} and \picard \cite{picard}. This guide is {\em not} aimed at users of the polarimeter (POL-2) or Fourier transform spectrometer (FTS-2). If you -have shared risk data (SRO) you should refer to the SMURF SRO -Cookbook\footnote{http://www.starlink.ac.uk/docs/sc19.htx/sc19.html}. +have shared risk data (SRO) you should refer to the +\xref{SMURF SRO +Cookbook.}{sc19}{}\latex{\footnote{\texttt{http://www.starlink.ac.uk/docs/sc19.htx/sc19.html}}} A brief description of the instrument and the observing modes is given in Section~\ref{sec:s2}. Details on data acquisition and instructions @@ -522,10 +523,11 @@ \subsection{\xlabel{computing}Before you start: Computing resources} environment variable to restrict each map-maker to half the available cores. -An alternative option is to download your reduced data from the JCMT -Science Archive at -CADC\footnote{http://www3.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/jcmt/}. See -Section~\ref{sec:pipe} for details on the science pipeline and +An alternative option is to download your reduced data from the +\htmladdnormallink{JCMT Science Archive at +CADC.}{http://www3.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/jcmt/} +\latex{\footnote{\texttt{http://www3.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/jcmt/}}} +See Section~\ref{sec:pipe} for details on the science pipeline and retrieving your data from CADC. \subsection{\xlabel{software}Before you start: Software} @@ -756,9 +758,11 @@ \section{\xlabel{data_files}Raw SCUBA-2 Data} \vspace{-2mm} The \param{SEQ\_TYPE} parameter in the FITS header may be used to identify the nature of each scan (see Section~\ref{sec:fitsheader}). -When you access you data either at -the JCMT or by downloading from the Science -Archive\footnote{http://www3.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/jcmt/} +When you access you data either at the JCMT or by downloading from the +\htmladdnormallink{Science Archive}{http://www3.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/jcmt/} +\begin{latexonly} +\footnote{http://www3.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/jcmt/} +\end{latexonly} you will get \emph{all} of the files listed above. Later when you reduce your data using the map-maker you will include \emph{all} of the files (noise + flat-fields + science). @@ -1093,9 +1097,16 @@ \subsection{\xlabel{clean}Notes on cleaning your data} the pre-processing stage. The commands for manually cleaning your data are given in Appendix~\ref{app:clean}. +% Split to avoid paragraph break mid-sentence. +\begin{htmlonly} +You can also check out the \xref{SMURF SRO Cookbook}{sc19}{} which +goes into great depth on the data cleaning options. +\end{htmlonly} +\begin{latexonly} You can also check out the SMURF SRO -Cookbook\footnote{http://www.starlink.ac.uk/docs/sc19.htx/sc19.html} +Cookbook{\footnote{http://www.starlink.ac.uk/docs/sc19.htx/sc19.html}} which goes into great depth on the data cleaning options. +\end{latexonly} \subsection{\xlabel{calcnoise}Checking the array performance} @@ -2880,8 +2891,9 @@ \subsection{\xlabel{Cosmology}Deep point-source maps} \end{itemize} \textbf{Note:} A \picard\ recipe dealing specifically with blank field -maps is under development. Follow the \emph{Pipelines and Archives -blog}\footnote{http://pipelinesandarchives.blogspot.com/} for all the +maps is under development. Follow the \htmladdnormallink{\emph{Pipelines and Archives +blog}}{http://pipelinesandarchives.blogspot.com/} +\latex{\footnote{http://pipelinesandarchives.blogspot.com/}} for all the latest updates and releases. \subsection{\xlabel{Galactic}Extended galactic sources}