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README.md

Genotype Markers

Pipeline to design genotype markers. This was built to design markers for the Sequenom and GoldenGate platforms. This pipeline requires VCFtools v0.1.14+. This software is written in Perl.

If you have one population VCF file, use the scripts provided in the pop_sample folder.

If you have two VCF files, use the scripts provided in the two_sample folder.

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